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Dataset information

BSID: BS0000863

Classification: Mammals

CommonName: Human

LatinName: Homo sapiens

Tissue: Brain

Region: Prefrontal cortex

DevoStage: Aging

Timing: Aging

Diseases: Alzheimer's disease

ActualCellNum: 1055063

Tech: Chromium

Section: BrainDiz

SubSection:

ReferenceGenome: GRCh38

Title: Single-cell atlas reveals correlates of high cognitive function, dementia, and resilience to Alzheimer's disease pathology

Journal: Cell

PMID: 37774677

Year: 2023

Part 1: EAGLE, Expression Atlas at Gene LEvel
  • UMAP expression
  • GeneSet expression
Explore data at the single-gene level
Features
Explore data at the gene set level
    • Select
    • BriefIntro
    • Remark
    • GeneNum
    • GeneList
    Gene set expression



    Part 2: ANT, Association Network infered from Transcriptome
    Explore data at the gene set level
      • Select
      • BriefIntro
      • Remark
      • GeneNum
      • GeneList
      • Association
      Putative positive regulators of
      Show
      entries
      Search:
      • Symbol
      • Correlation
      • P value
      • Adjusted P value
      Putative negative regulators of
      Show
      entries
      Search:
      • Symbol
      • Correlation
      • P value
      • Adjusted P value
      Part 3: SWAN, Sample-Wise Statistics & ANnotation
      • Statistics
      • Clustering
      • Celltype Annotation
      • Celltype DEG
      QC plot
      Clustering plot
      Cluster DEG
      Show
      entries
      Search:
        Celltype proportion
        BubblePlot
        ViolinPlot
        HeatMap
        FeaturePlot
        UMAP of CellTypes and Clusters
        CellType DEG
        Show
        entries
        Search:
          Part 4: TURTLE, TimeScale Unbiased Review of cellType and Lineage Expression
          • Cross species expression
          Part 5: EEL, Easy Enrichment of gene List
          EEL, Easy Enrichment of gene List (POSTER)
          Mode 1: select BSID
          scRNA-Seq dataset selection
          • Classification
          • Species
          • Tissue
          Dataset information

          BSID: {{dataInfo.BSID}}

          Classification: {{dataInfo.Classification}}

          CommonName: {{dataInfo.CommonName}}

          LatinName: {{dataInfo.LatinName}}

          BrainRegion:{{dataInfo.Region}}

          Timing:{{dataInfo.Timing}}

          Diseases: {{dataInfo.Diseases}}

          Tech: {{dataInfo.Diseases}}

          CellNum: {{dataInfo.Tech}}

          Title: {{dataInfo.Title}}

          Journal: {{dataInfo.Journal}}

          PMID: {{dataInfo.PMID}}

          Matrix Download : Click to download

          Shinycell: View data

          Mode 2: select gene list
          • Gene List
          • scRNASeq
          • Spatial Transcriptomics
          Input Genes
          Choose a subsection
          • Dimensions
          Enter your own Gene symbols
          Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).
          Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).
          Top 10 Enriched Dimensions
            Top 30 Enriched Dimensions
            List of Enriched Dimensions
            Download
            • Tag
            • Intersect gene num
            • p val
            • p val adj
            Part 6: Raccoon, Resource ACCOrding to atlas ONtology
            EAGLE
            ANT
            SWAN
            TURTLE
            EEL
            RACCOON