Cross-Speices Brain Atlas in the light of evolution

: Cell atlas of trajectory; Cell atlas of trajectory

: Association; Association

: Regulators of trajectory; Regulators of trajectory

: DEG during trajectory; DEG during trajectory

: DissectEvo; Gene expression patterns

: Embryo_sc; scEggMuGA

: Embryo_st; stEggMuGA

: RatingList; Enrichment (ToppGene and Poster)

: SpeciesDyn; SpeciesDyn

: PathologyDyn; PathologyDyn

: EmbryogenesisDyn; EmbryogenesisDyn

: AnatomyDyn; AnatomyDyn

: RegionDyn; RegionDyn

: SpaceDyn; SpaceDyn

: ExternalLink; ExternalLink

: NaviA2Z; NaviA2Z

: Download; Download

Part01: Cell atlas of trajectory (Eagle, Expression Atlas at Gene LEvel)

UMAP

Explore data at the single-gene level (2000 cells sampled)

Features

Part02: Association Network infered from Transcriptome (Ant)

Select
Type
BriefIntro
GeneNum
GeneList

Association

Putative positive regulators of

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entries

Search:

Symbol
Correlation
P value
Adjusted P value

Putative negative regulators of

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entries

Search:

Symbol
Correlation
P value
Adjusted P value

Part03: Regulators of trajectory

CytoTrace
Top10 HVG TF Table
Top10 HVG TF Image
G2G

View ligand-receptor mediated cellular communications

Download

CytoTRACE
Component1
Component2
Phenotype

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entries

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Genetic regulatory networks
GO term
Regulon shiny

Part04: DEG during trajectory

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entries

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Search:

Part05: Dissecting gene expression patterns across species during evolution

Gene expression patterns

Part06: Embryo atlas and gene expression dynamics at single-cell resolution

scEggMuGA

Gene list

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entries

Download gene list

Search:

Select
GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Unfold all

Part07: Embryo atlas and gene expression dynamics at spatial resolution

stEggMuGA

Gene list

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entries

Download gene list

Search:

Select
GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Unfold all

Part08: Rating of gene list by ToppGene and Poster enrichment

ToppGene enrichment
Poster enrichment

Gene list
ToppGene enrichment
PPI
Motif enrichment

Celltype: cell type; Symbol: gene symbol; p_val: p value; avg_log2FC: average logfc between two groups; p_val_adj: adjusted p-value;

Download

Toppgen enrichment analysis of genelist

Download

Category
ID
Name
PValue
QValueFDRBH
QValueFDRBY
Detail

{{item.name}}

Mode 1: select BSID

Classification
Species
Tissue

Dataset information

BSID: {{dataInfo.BSID}}

Classification: {{dataInfo.Classification}}

CommonName: {{dataInfo.CommonName}}

LatinName: {{dataInfo.LatinName}}

BrainRegion:{{dataInfo.Region}}

Timing:{{dataInfo.Timing}}

Diseases: {{dataInfo.Diseases}}

Tech: {{dataInfo.Diseases}}

CellNum: {{dataInfo.Tech}}

Title: {{dataInfo.Title}}

Journal: {{dataInfo.Journal}}

PMID: {{dataInfo.PMID}}

Matrix Download : Click to download

Shinycell: View data

Mode 2: select gene list

Gene List
scRNASeq
Spatial Transcriptomics

Input Genes

Choose a subsection

Dimensions

Choose file Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).

Top 10 Enriched Dimensions

Top 30 Enriched Dimensions

List of Enriched Dimensions

Download

Tag
Intersect gene num
p val
p val adj

Part09: SpeciesDyn

SpeciesDyn

Gene list

Show

entries

Download gene list

Search:

Select
GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Species

Part10: PathologyDyn

PathologyDyn

Gene list

Show

entries

Download gene list

Search:

Select
GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Part11: EmbryogenesisDyn

EmbryogenesisDyn

Gene list

Show

entries

Download gene list

Search:

Select
GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Devo

Part12: AnatomyDyn

AnatomyDyn

Gene list

Show

entries

Download gene list

Search:

Select
GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Tissue

Part13: RegionDyn

RegionDyn

Gene list

Show

entries

Download gene list

Search:

Select
GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Region

Part14: SpaceDyn

SpaceDyn

Gene list

Show

entries

Download gene list

Search:

Select
GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Space

The geneset you selected is:

Species
Tissue
Devo
Diz

View gene expression profiles of different chips

Show me

Part15: ExternalLink

ExternalLink

Part16: NaviA2Z

NaviA2Z

Part17: Download

Download