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Card
Association
Regulation
Dissecting
DissectEvo
Embryo_sc
Embryo_st
RatingList
SpeciesDyn
PathologyDyn
EmbryogenesisDyn
AnatomyDyn
RegionDyn
SpaceDyn
ExternalLink
NaviA2Z
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Part01: Card information and Cellular communication (cell2cell network)
  • Dataset information
  • Cellular communications
  • Cellular crosstalk
  • Signaling pathway
  • Ligand-receptor
View ligand-receptor mediated cellular communications
Download
  • Source
  • Target
  • Ligand
  • Receptor
  • Prob
  • Pval
  • Interaction Name
  • Interaction Name 2
  • Pathway_name
  • Annotation
  • Evidence
Part02: Association Network infered from Transcriptome (Ant)
  • Ant
    • Select
    • BriefIntro
    • Remark
    • GeneNum
    • GeneList
    • Association
    Putative positive regulators of
    Show
    entries
    Search:
    • Symbol
    • Correlation
    • P value
    • Adjusted P value
    Putative negative regulators of
    Show
    entries
    Search:
    • Symbol
    • Correlation
    • P value
    • Adjusted P value
    Part03: Regulatory network
    • G2G
    • Genetic regulatory networks
    • GO term
    • Regulon shiny
    • CellType
    • CellType
    Part04: Dissecting receptor expression patterns (PCR, Pathogen and cell receptor mediated network)
    • Dissecting
    View virus and host information
    Virus information

    Virus:Coxsackievirus A9

    Family:Picornaviridae

    Host:Homo sapiens (Human)

    Target Gene:ITGB3,ITGAV,ITGB6

    Dataset information

    BSID: BS0000868

    Classification: Mammals

    CommonName: Human

    LatinName: Homo sapiens

    BrainRegion: Prefrontal cortex

    Timing: >75 years old

    Diseases: Aging

    Tech: Chromium

    CellNum: 213472

    Title: Epigenomic dissection of Alzheimer's disease pinpoints causal variants and reveals epigenome erosion

    Journal: Cell

    PMID: 37774680

    Matrix Download : Click to download

    Shinycell: View data

    • All Target Gene
    • ITGB3
    • ITGAV
    • ITGB6

    Virus target gene expression

    View expression summary
    Download
    • VirusID
    • Virus
    • Gene
    • Celltype
    • MeanExpression

    Virus target gene expression

    mRNA expression of ITGB3 in human tissues [NCBI]

    Protein expression of ITGB3 in human tissues [Proteinatlas]

    Virus target gene expression

    mRNA expression of ITGAV in human tissues [NCBI]

    Protein expression of ITGAV in human tissues [Proteinatlas]

    Virus target gene expression

    mRNA expression of ITGB6 in human tissues [NCBI]

    Protein expression of ITGB6 in human tissues [Proteinatlas]

    Part05: Dissecting gene expression patterns across species during evolution
    • Gene expression patterns
    Part06: Embryo atlas and gene expression dynamics at single-cell resolution
    • scEggMuGA
    Gene list
    Show
    entries
    Download gene list
    Search:
    • Select
    • GeneSymbol
    • EnsembllD
    • GeneCard Link
    • NCBI Link
    • Ensembl Link
    • UniProt Link
    Unfold all
      Part07: Embryo atlas and gene expression dynamics at spatial resolution
      • stEggMuGA
      Gene list
      Show
      entries
      Download gene list
      Search:
      • Select
      • GeneSymbol
      • EnsembllD
      • GeneCard Link
      • NCBI Link
      • Ensembl Link
      • UniProt Link
      Unfold all
        Part08: Rating of gene list by ToppGene and Poster enrichment
        • ToppGene enrichment
        • Poster enrichment
        • Gene list
        • ToppGene enrichment
        • PPI
        • Motif enrichment

        Celltype: cell type; Symbol: gene symbol; p_val: p value; avg_log2FC: average logfc between two groups; p_val_adj: adjusted p-value;

        Download
          Toppgen enrichment analysis of genelist
          Download
            • Category
            • ID
            • Name
            • PValue
            • QValueFDRBH
            • QValueFDRBY
            • Detail

            Mode 1: select BSID
            {{ tabName }}
            • Classification
            • Species
            • Tissue
            Dataset information

            BSID: {{dataInfo.BSID}}

            Classification: {{dataInfo.Classification}}

            CommonName: {{dataInfo.CommonName}}

            LatinName: {{dataInfo.LatinName}}

            BrainRegion:{{dataInfo.Region}}

            Timing:{{dataInfo.Timing}}

            Diseases: {{dataInfo.Diseases}}

            Tech: {{dataInfo.Diseases}}

            CellNum: {{dataInfo.Tech}}

            Title: {{dataInfo.Title}}

            Journal: {{dataInfo.Journal}}

            PMID: {{dataInfo.PMID}}

            Matrix Download : Click to download

            Shinycell: View data

            Mode 2: select gene list
            • Gene List
            • scRNASeq
            • Spatial Transcriptomics
            Input Genes
            Choose a subsection
            • Dimensions
            Enter your own Gene symbols
            Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).
            Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).
            Top 10 Enriched Dimensions
              Top 30 Enriched Dimensions
              List of Enriched Dimensions
              Download
              • Tag
              • Intersect gene num
              • p val
              • p val adj
              Part09: SpeciesDyn
              • SpeciesDyn
              Gene list
              Show
              entries
              Download gene list
              Search:
              • Select
              • GeneSymbol
              • EnsembllD
              • GeneCard Link
              • NCBI Link
              • Ensembl Link
              • UniProt Link
              • Species
              Part10: PathologyDyn
              • PathologyDyn
              Gene list
              Show
              entries
              Download gene list
              Search:
              • Select
              • GeneSymbol
              • EnsembllD
              • GeneCard Link
              • NCBI Link
              • Ensembl Link
              • UniProt Link
              • Diz
              Part11: EmbryogenesisDyn
              • EmbryogenesisDyn
              Gene list
              Show
              entries
              Download gene list
              Search:
              • Select
              • GeneSymbol
              • EnsembllD
              • GeneCard Link
              • NCBI Link
              • Ensembl Link
              • UniProt Link
              • Devo
              Part12: AnatomyDyn
              • AnatomyDyn
              Gene list
              Show
              entries
              Download gene list
              Search:
              • Select
              • GeneSymbol
              • EnsembllD
              • GeneCard Link
              • NCBI Link
              • Ensembl Link
              • UniProt Link
              • Tissue
              Part13: RegionDyn
              • RegionDyn
              Gene list
              Show
              entries
              Download gene list
              Search:
              • Select
              • GeneSymbol
              • EnsembllD
              • GeneCard Link
              • NCBI Link
              • Ensembl Link
              • UniProt Link
              • Region
              Part14: SpaceDyn
              • SpaceDyn
              Gene list
              Show
              entries
              Download gene list
              Search:
              • Select
              • GeneSymbol
              • EnsembllD
              • GeneCard Link
              • NCBI Link
              • Ensembl Link
              • UniProt Link
              • Space
              The geneset you selected is:
              More
              • Species
              • Tissue
              • Devo
              • Diz
              View gene expression profiles of different chips
                Show me
                Part15: ExternalLink
                • ExternalLink
                Part16: NaviA2Z
                • NaviA2Z
                  Part17: Download
                  • Download
                    Card
                    Association
                    Regulation
                    Dissecting
                    DissectEvo
                    Embryo_sc
                    Embryo_st
                    RatingList
                    SpeciesDyn
                    PathologyDyn
                    EmbryogenesisDyn
                    AnatomyDyn
                    RegionDyn
                    SpaceDyn
                    ExternalLink
                    NaviA2Z
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