Cross-Speices Brain Atlas in the light of evolution

: Card; Card information

: Association; Association

: Regulation; Regulation

: Dissecting; Dissecting the correlation of gene lists

: GeneExp; Gene expression patterns

: scEggMuGA; scEggMuGA

: stEggMuGA; stEggMuGA

: ToppGene; ToppGene enrichment

: Poster; Poster enrichment

: SpeciesDyn; SpeciesDyn

: PathologyDyn; PathologyDyn

: EmbryogenesisDyn; EmbryogenesisDyn

: AnatomyDyn; AnatomyDyn

: RegionDyn; RegionDyn

: SpaceDyn; SpaceDyn

: ExternalLink; ExternalLink

: NaviA2Z; NaviA2Z

: Download; Download

Part01: Card information

CardInfo

Part02: Association

Association

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Part03: Regulation

Regulation

G2G

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Part04: Dissecting the correlation of gene lists

Dissecting the correlation of gene lists

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Part01: Dissecting gene expression patterns across species during evolution

Gene expression patterns

Part02: Embryo atlas and gene expression dynamics at single-cell resolution

scEggMuGA

Gene list

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GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
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Unfold all

Part03: Embryo atlas and gene expression dynamics at spatial resolution

stEggMuGA

Gene list

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GeneSymbol
EnsembllD
GeneCard Link
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Part04: Rating of gene list by ToppGene and Poster enrichment

ToppGene enrichment

Gene list
ToppGene enrichment
PPI
Motif enrichment

Celltype: cell type; Symbol: gene symbol; p_val: p value; avg_log2FC: average logfc between two groups; p_val_adj: adjusted p-value;

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Toppgen enrichment analysis of genelist

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Category
ID
Name
PValue
QValueFDRBH
QValueFDRBY
Detail

Part04: Rating of gene list by ToppGene and Poster enrichment

Poster enrichment

{{item.name}}

Mode 1: select BSID

Classification
Species
Tissue

Dataset information

BSID: {{dataInfo.BSID}}

Classification: {{dataInfo.Classification}}

CommonName: {{dataInfo.CommonName}}

LatinName: {{dataInfo.LatinName}}

BrainRegion:{{dataInfo.Region}}

Timing:{{dataInfo.Timing}}

Diseases: {{dataInfo.Diseases}}

Tech: {{dataInfo.Diseases}}

CellNum: {{dataInfo.Tech}}

Title: {{dataInfo.Title}}

Journal: {{dataInfo.Journal}}

PMID: {{dataInfo.PMID}}

Matrix Download : Click to download

Shinycell: View data

Mode 2: select gene list

Gene List
scRNASeq
Spatial Transcriptomics

Input Genes

Choose a subsection

Dimensions

Choose file Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).

Top 10 Enriched Dimensions

Top 30 Enriched Dimensions

List of Enriched Dimensions

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Tag
Intersect gene num
p val
p val adj

Part05: SpeciesDyn

SpeciesDyn

Gene list

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GeneSymbol
EnsembllD
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Species

Part06: PathologyDyn

PathologyDyn

Gene list

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EnsembllD
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Part07: EmbryogenesisDyn

EmbryogenesisDyn

Gene list

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Devo

Part08: AnatomyDyn

AnatomyDyn

Gene list

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EnsembllD
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Tissue

Part09: RegionDyn

RegionDyn

Gene list

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GeneSymbol
EnsembllD
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Region

Part10: SpaceDyn

SpaceDyn

Gene list

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GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
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Space

The geneset you selected is:

Species
Tissue
Devo
Diz

View gene expression profiles of different chips

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Part11: ExternalLink

ExternalLink

Part12: NaviA2Z

NaviA2Z

Part13: Download

Download