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Turbot
Focused on Turbot species, this submodule includes ATAC-seq data for studying fish chromatin structures, with tools to visualize and analyze gene regulation and epigenomic variations in aquaculture and evolutionary studies.
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PeaksInformation
Inference
Associated
Network
OverlapEnhancer
GeneExp
scEggMuGA
stEggMuGA
ToppGene
Poster
PathologyDyn
EmbryogenesisDyn
AnatomyDyn
RegionDyn
SpaceDyn
ExternalLink
NaviA2Z
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Part01: Peaks information and annotation
  • Peaks information and annotation
  • Peaks information and annotation
  • Peaks information and annotation
  • Peaks information and annotation
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    Part02: Inference of peak targets
    • Inference of peak targets
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      Part03: Associated transcription factors (motif enrichment)
      • Associated transcription factors (motif enrichment)
      Part04: Network of proteins (PPI)
      • Network of proteins (PPI)
      Part05: Overlap Enhancer/Cis-elements
      • Overlap Enhancer/Cis-elements
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        Part06: Dissecting gene expression patterns across species during evolution
        • Gene expression patterns
        Part07: Embryo atlas and gene expression dynamics at single-cell resolution
        • scEggMuGA
        Gene list
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        • GeneSymbol
        • EnsembllD
        • GeneCard Link
        • NCBI Link
        • Ensembl Link
        • UniProt Link
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          Part08: Embryo atlas and gene expression dynamics at spatial resolution
          • stEggMuGA
          Gene list
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          • GeneSymbol
          • EnsembllD
          • GeneCard Link
          • NCBI Link
          • Ensembl Link
          • UniProt Link
          Unfold all
            Part09: Rating of gene list by ToppGene and Poster enrichment
            • ToppGene enrichment
            Toppgen enrichment analysis of genelist
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              • Category
              • ID
              • Name
              • PValue
              • QValueFDRBH
              • QValueFDRBY
              • Detail
              Part10: Rating of gene list by ToppGene and Poster enrichment
              • Poster enrichment
              Mode 1: select BSID
              {{ tabName }}
              • Classification
              • Species
              • Tissue
              Dataset information

              BSID: {{dataInfo.BSID}}

              Classification: {{dataInfo.Classification}}

              CommonName: {{dataInfo.CommonName}}

              LatinName: {{dataInfo.LatinName}}

              BrainRegion:{{dataInfo.Region}}

              Timing:{{dataInfo.Timing}}

              Diseases: {{dataInfo.Diseases}}

              Tech: {{dataInfo.Diseases}}

              CellNum: {{dataInfo.Tech}}

              Title: {{dataInfo.Title}}

              Journal: {{dataInfo.Journal}}

              PMID: {{dataInfo.PMID}}

              Matrix Download : Click to download

              Shinycell: View data

              Mode 2: select gene list
              • Gene List
              • scRNASeq
              • Spatial Transcriptomics
              Input Genes
              Choose a subsection
              • Dimensions
              Enter your own Gene symbols
              Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).
              Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).
              Top 10 Enriched Dimensions
                Top 30 Enriched Dimensions
                List of Enriched Dimensions
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                • Tag
                • Intersect gene num
                • p val
                • p val adj
                Part11: PathologyDyn
                • PathologyDyn
                Gene list
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                • GeneSymbol
                • EnsembllD
                • GeneCard Link
                • NCBI Link
                • Ensembl Link
                • UniProt Link
                • Diz
                Part12: EmbryogenesisDyn
                • EmbryogenesisDyn
                Gene list
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                • GeneSymbol
                • EnsembllD
                • GeneCard Link
                • NCBI Link
                • Ensembl Link
                • UniProt Link
                • Devo
                Part13: AnatomyDyn
                • AnatomyDyn
                Gene list
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                • GeneSymbol
                • EnsembllD
                • GeneCard Link
                • NCBI Link
                • Ensembl Link
                • UniProt Link
                • Tissue
                Part14: RegionDyn
                • RegionDyn
                Gene list
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                entries
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                • GeneSymbol
                • EnsembllD
                • GeneCard Link
                • NCBI Link
                • Ensembl Link
                • UniProt Link
                • Region
                Part15: SpaceDyn
                • SpaceDyn
                Gene list
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                • GeneSymbol
                • EnsembllD
                • GeneCard Link
                • NCBI Link
                • Ensembl Link
                • UniProt Link
                • Space
                The geneset you selected is:
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                • Species
                • Tissue
                • Devo
                • Diz
                View gene expression profiles of different chips
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                  Part16: ExternalLink
                  • ExternalLink
                  Part17: NaviA
                  • NaviA2Z
                    Part18: Download
                    • Download
                      PeaksInformation
                      Inference
                      Associated
                      Network
                      OverlapEnhancer
                      GeneExp
                      scEggMuGA
                      stEggMuGA
                      ToppGene
                      Poster
                      PathologyDyn
                      EmbryogenesisDyn
                      AnatomyDyn
                      RegionDyn
                      SpaceDyn
                      ExternalLink
                      NaviA2Z
                      Download