Cross-Speices Brain Atlas in the light of evolution

: PeaksInformation; Peaks information and annotation

: Inference; Inference of peak targets

: Associated; Associated transcription factors (motif enrichment)

: Network; Network of proteins (PPI)

: OverlapEnhancer; Overlap Enhancer/Cis-elements

: GeneExp; Gene expression patterns

: scEggMuGA; scEggMuGA

: stEggMuGA; stEggMuGA

: ToppGene; ToppGene enrichment

: Poster; Poster enrichment

: PathologyDyn; PathologyDyn

: EmbryogenesisDyn; EmbryogenesisDyn

: AnatomyDyn; AnatomyDyn

: RegionDyn; RegionDyn

: SpaceDyn; SpaceDyn

: ExternalLink; ExternalLink

: NaviA2Z; NaviA2Z

: Download; Download

Part01: Peaks information and annotation

Peaks information and annotation
Peaks information and annotation
Peaks information and annotation
Peaks information and annotation

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Part02: Inference of peak targets

Inference of peak targets

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Part03: Associated transcription factors (motif enrichment)

Associated transcription factors (motif enrichment)

Part04: Network of proteins (PPI)

Network of proteins (PPI)

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Part05: Overlap Enhancer/Cis-elements

Overlap Enhancer/Cis-elements

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Part06: Dissecting gene expression patterns across species during evolution

Gene expression patterns

Part07: Embryo atlas and gene expression dynamics at single-cell resolution

scEggMuGA

Gene list

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GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Unfold all

Part08: Embryo atlas and gene expression dynamics at spatial resolution

stEggMuGA

Gene list

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GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
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Unfold all

Part09: Rating of gene list by ToppGene and Poster enrichment

ToppGene enrichment

Toppgen enrichment analysis of genelist

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Category
ID
Name
PValue
QValueFDRBH
QValueFDRBY
Detail

Part10: Rating of gene list by ToppGene and Poster enrichment

Poster enrichment

{{item.name}}

Mode 1: select BSID

Classification
Species
Tissue

Dataset information

BSID: {{dataInfo.BSID}}

Classification: {{dataInfo.Classification}}

CommonName: {{dataInfo.CommonName}}

LatinName: {{dataInfo.LatinName}}

BrainRegion:{{dataInfo.Region}}

Timing:{{dataInfo.Timing}}

Diseases: {{dataInfo.Diseases}}

Tech: {{dataInfo.Diseases}}

CellNum: {{dataInfo.Tech}}

Title: {{dataInfo.Title}}

Journal: {{dataInfo.Journal}}

PMID: {{dataInfo.PMID}}

Matrix Download : Click to download

Shinycell: View data

Mode 2: select gene list

Gene List
scRNASeq
Spatial Transcriptomics

Input Genes

Choose a subsection

Dimensions

Choose file Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).

Top 10 Enriched Dimensions

Top 30 Enriched Dimensions

List of Enriched Dimensions

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Tag
Intersect gene num
p val
p val adj

Part11: PathologyDyn

PathologyDyn

Gene list

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GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
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Part12: EmbryogenesisDyn

EmbryogenesisDyn

Gene list

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GeneSymbol
EnsembllD
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Devo

Part13: AnatomyDyn

AnatomyDyn

Gene list

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GeneSymbol
EnsembllD
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Tissue

Part14: RegionDyn

RegionDyn

Gene list

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GeneSymbol
EnsembllD
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Region

Part15: SpaceDyn

SpaceDyn

Gene list

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entries

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GeneSymbol
EnsembllD
GeneCard Link
NCBI Link
Ensembl Link
UniProt Link

Space

The geneset you selected is:

Species
Tissue
Devo
Diz

View gene expression profiles of different chips

Show me

Part16: ExternalLink

ExternalLink

Part17: NaviA

NaviA2Z

Part18: Download

Download