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Dataset information

BSID: BS1728389121003

Classification: Mammals

CommonName: Human

LatinName: Homo sapiens

Tissue: Brain

Region: Motor cortex;Parietal cortex;Prefrontal cortex;Somatosensory cortex;Temporal cortex;Visual cortex

DevoStage: Embryo

Timing: GW17

Diseases: Normal

ActualCellNum: 457965

Tech: Chromium v2

Section: BrainDevo

SubSection: Normal;Development

ReferenceGenome: NA

Title: An atlas of cortical arealization identifies dynamic molecular signatures

Journal: Nature

PMID: 34616070

Year: 2021

Part 1: EAGLE, Expression Atlas at Gene LEvel
  • UMAP expression
  • GeneSet expression
Explore data at the single-gene level
Features
Explore data at the gene set level
    • Select
    • BriefIntro
    • Remark
    • GeneNum
    • GeneList
    Gene set expression



    Part 2: ANT, Association Network infered from Transcriptome
    Explore data at the gene set level
      • Select
      • BriefIntro
      • Remark
      • GeneNum
      • GeneList
      • Association
      Putative positive regulators of
      Show
      entries
      Search:
      • Symbol
      • Correlation
      • P value
      • Adjusted P value
      Putative negative regulators of
      Show
      entries
      Search:
      • Symbol
      • Correlation
      • P value
      • Adjusted P value
      Part 3: SWAN, Sample-Wise Statistics & ANnotation
      • Statistics
      • Clustering
      • Celltype Annotation
      • Celltype DEG
      QC plot
      Clustering plot
      Cluster DEG
      Show
      entries
      Search:
        Celltype proportion
        BubblePlot
        ViolinPlot
        HeatMap
        FeaturePlot
        UMAP of CellTypes and Clusters
        CellType DEG
        Show
        entries
        Search:
          Part 4: TURTLE, TimeScale Unbiased Review of cellType and Lineage Expression
          • Cross species expression
          Part 5: EEL, Easy Enrichment of gene List
          EEL, Easy Enrichment of gene List (ToppGene)
          • Gene list
          • ToppGene enrichment
          • PPI
          • Motif enrichment

          Celltype: cell type; Symbol: gene symbol; p_val: p value; avg_log2FC: average logfc between two groups; p_val_adj: adjusted p-value;

          Download
          • Celltype
          • Symbol
          • p_val
          • avg_log2FC
          • p_val_adj
          Toppgen enrichment analysis of genelist
          Download
            • Category
            • ID
            • Name
            • PValue
            • QValueFDRBH
            • QValueFDRBY
            • Detail

            EEL, Easy Enrichment of gene List (POSTER)
            Mode 1: select BSID
            scRNA-Seq dataset selection
            • Classification
            • Species
            • Tissue
            Dataset information

            BSID: {{dataInfo.BSID}}

            Classification: {{dataInfo.Classification}}

            CommonName: {{dataInfo.CommonName}}

            LatinName: {{dataInfo.LatinName}}

            BrainRegion:{{dataInfo.Region}}

            Timing:{{dataInfo.Timing}}

            Diseases: {{dataInfo.Diseases}}

            Tech: {{dataInfo.Diseases}}

            CellNum: {{dataInfo.Tech}}

            Title: {{dataInfo.Title}}

            Journal: {{dataInfo.Journal}}

            PMID: {{dataInfo.PMID}}

            Matrix Download : Click to download

            Shinycell: View data

            Mode 2: select gene list
            • Gene List
            • scRNASeq
            • Spatial Transcriptomics
            Input Genes
            Choose a subsection
            • Dimensions
            Enter your own Gene symbols
            Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).
            Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).
            Top 10 Enriched Dimensions
              Top 30 Enriched Dimensions
              List of Enriched Dimensions
              Download
              • Tag
              • Intersect gene num
              • p val
              • p val adj
              Part 6: Raccoon, Resource ACCOrding to atlas ONtology
              EAGLE
              ANT
              SWAN
              TURTLE
              EEL
              RACCOON