Cross-Speices Brain Atlas in the light of evolution

: DataInfo&Gene; Expression atlas at gene level

: ShinyAtlas; Using ShinyCell to explore the dataset

: HomoGene; Files of the homologous gene conversion process

: GeneSets&TF; Association network infered from transcriptome

: Stats&Anno; Sample-wise statistics & annotation

: TimeScaleReview; Timescale unbiased review of celltype and lineage expression

: Enrichment; Enrichment of gene list

Part 1: DataInfo&Gene, Expression atlas at gene level

Information
GeneSet Exp

Explore data at the single-gene level (2000 cells sampled)

Features

Explore data at the gene set level

Select
BriefIntro
Remark
GeneNum
GeneList

Gene set expression

Part 2: ShinyAtlas, Using ShinyCell to explore the dataset

ShinyCell

Explore data at the single-gene level

Part 3: HomoGene, Files of the homologous gene conversion process

Homologous Gene
Faa
Gtf

Table

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entries

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Download File

Download File

Part 4: GeneSets&TF, Association network infered from transcriptome

Explore data at the gene set level

Select
BriefIntro
Remark
GeneNum
GeneList

Association

Putative positive regulators of

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entries

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Symbol
Correlation
P value
Adjusted P value

Putative negative regulators of

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entries

Search:

Symbol
Correlation
P value
Adjusted P value

Part 5: Stats&Anno, Sample-wise statistics & annotation

Statistics
Celltype Annotation
Celltype&Clustering DEG

Image

Ast

End

Mic

Neu

OPC

Olg

Others

Image

The DEG of CellType

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entries

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The DEG of leiden cluster

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entries

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Part 6: TimeScaleReview, Timescale unbiased review of celltype and lineage expression

Cross species expression

Part 7: Enrichment, Enrichment of gene list

Eel, Easy Enrichment of gene List (ToppGene)

Gene list
ToppGene enrichment
PPI
Motif enrichment

Celltype: cell type; Symbol: gene symbol; p_val: p value; avg_log2FC: average logfc between two groups; p_val_adj: adjusted p-value;

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Toppgen enrichment analysis of genelist

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Category
ID
Name
PValue
QValueFDRBH
QValueFDRBY
Detail