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scRNA-Seq DataSet
The scRNA-Seq DataSet page provides a comprehensive platform for exploring single-cell RNA sequencing data from multiple perspectives. Users can analyze gene expression at both the single-gene and gene set levels, examine homologous genes across species, and leverage ShinyCell for interactive comparisons. The platform offers insights into transcriptome-inferred association networks, sample statistics, and annotation quality. Additionally, it enables evolutionary expression analysis across species, gene list enrichment, protein-protein interaction (PPI) networks, and motif analysis. Users can also access raw data, processed matrices, and analytical results for further research.
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DataInfo&Gene
HomoGene
GeneSets&TF
Stats&Anno
TimeScaleReview
Enrichment
Part 1: DataInfo&Gene, Expression atlas at gene level
  • Information
  • GeneSet Exp
Explore data at the single-gene level (2000 cells sampled)
Features
Explore data at the gene set level
    • Select
    • BriefIntro
    • Remark
    • GeneNum
    • GeneList
    Gene set expression



    Part 3: HomoGene, Files of the homologous gene conversion process
    • Homologous Gene
    • Faa
    • Gtf
    Table
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    entries
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      Part 4: GeneSets&TF, Association network infered from transcriptome
      • Explore data at the gene set level
        • Select
        • BriefIntro
        • Remark
        • GeneNum
        • GeneList
        • Association
        Putative positive regulators of
        Show
        entries
        Search:
        • Symbol
        • Correlation
        • P value
        • Adjusted P value
        Putative negative regulators of
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        entries
        Search:
        • Symbol
        • Correlation
        • P value
        • Adjusted P value
        Part 5: Stats&Anno, Sample-wise statistics & annotation
        • Statistics
        • Celltype Annotation
        • Celltype&Clustering DEG
        Image
        Image
        Image
        Image
        Image
        Image
        The DEG of CellType
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        entries
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          The DEG of leiden cluster
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          entries
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            Part 6: TimeScaleReview, Timescale unbiased review of celltype and lineage expression
            • Cross species expression
            Part 7: Enrichment, Enrichment of gene list
            • Eel, Easy Enrichment of gene List (ToppGene)
            • Gene list
            • ToppGene enrichment
            • PPI
            • Motif enrichment

            Celltype: cell type; Symbol: gene symbol; p_val: p value; avg_log2FC: average logfc between two groups; p_val_adj: adjusted p-value;

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              Toppgen enrichment analysis of genelist
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                • Category
                • ID
                • Name
                • PValue
                • QValueFDRBH
                • QValueFDRBY
                • Detail

                DataInfo&Gene
                HomoGene
                GeneSets&TF
                Stats&Anno
                TimeScaleReview
                Enrichment