Cross-Speices Brain Atlas in the light of evolution

: Deer; Disease, Evolution, Embryogenesis, Region scope of cell populations

: Rats; Receptor Aided Targets screening

: Emu; Evolution Map underlying the Tree of life

: Ant; Association Network infered from Transcriptome

: Mule; MolecUlar LandscapE

: Tiger; Trajectory Inference from Gene Expression Reference

: Iguana; InteGrated ANnotAtion

: Mammoth; MArkers Map for Model animal and OrTHlogous species

: Eft; Epigenetic factor and Target genes

Part01: Deer, Disease, Evolution, Embryogenesis, Region scope of cell populations

Disease
Evolution
Embryogenesis
Region

Explore data at the single-gene level (2000 cells sampled)

Features

Explore data at the single-gene level (2000 cells sampled)

Features

Explore data at the single-gene level (2000 cells sampled)

Features

Explore data at the single-gene level (2000 cells sampled)

Features

Part02: Rats, Receptor Aided Targets screening

Rat_show

Virus target gene selection

Virus Family
Virus
Classification
Species
BSID

View virus and host information

Virus information

Virus:Rabies lyssavirus

Family:Rhabdoviridae

Host:Homo sapiens (Human)

Target Gene:NGFR,NCAM1,GRM2

Dataset information

BSID: BS0001613

Classification: Mammals

CommonName: Domestic pig

LatinName: Sus scrofa

BrainRegion: M1

Timing: Adult

Diseases: Normal

Tech: Chromium

CellNum: 10000

Title: Allen

Journal: Allen

PMID: NA

Matrix Download : Click to download

Shinycell: View data

All Target Gene
NGFR
NCAM1
GRM2

Virus target gene expression

View expression summary

Download

VirusID
Virus
Gene
Celltype
MeanExpression

Virus target gene expression

mRNA expression of NGFR in human tissues [NCBI]

Protein expression of NGFR in human tissues [Proteinatlas]

Virus target gene expression

mRNA expression of NCAM1 in human tissues [NCBI]

Protein expression of NCAM1 in human tissues [Proteinatlas]

Virus target gene expression

mRNA expression of GRM2 in human tissues [NCBI]

Protein expression of GRM2 in human tissues [Proteinatlas]

Part03: Emu, Evolution Map underlying the Tree of life

Turtle

Part04: ANT, Association Network infered from Transcriptome

Select
Type
BriefIntro
GeneNum
GeneList

Association

Putative positive regulators of

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entries

Search:

Symbol
Correlation
P value
Adjusted P value

Putative negative regulators of

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entries

Search:

Symbol
Correlation
P value
Adjusted P value

Part05: Mule, MolecUlar LandscapE

Brain Hallmark defined by 108 gene sets

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entries

Search:

DimID
DimTitle
BSID
Detail

Comparision across multiple cancer types

Part06: Tiger, Trajectory Unsupervised re-construction of Key cell types

CytoTRACE

View ligand-receptor mediated cellular communications

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CytoTRACE
Component1
Component2
Phenotype

Part07: Iguana, InteGrated ANnotAtion

POSTER enrichment

{{item.name}}

Mode 1: select BSID

Classification
Species
Tissue

Dataset information

BSID: {{dataInfo.BSID}}

Classification: {{dataInfo.Classification}}

CommonName: {{dataInfo.CommonName}}

LatinName: {{dataInfo.LatinName}}

BrainRegion:{{dataInfo.Region}}

Timing:{{dataInfo.Timing}}

Diseases: {{dataInfo.Diseases}}

Tech: {{dataInfo.Diseases}}

CellNum: {{dataInfo.Tech}}

Title: {{dataInfo.Title}}

Journal: {{dataInfo.Journal}}

PMID: {{dataInfo.PMID}}

Matrix Download : Click to download

Shinycell: View data

Mode 2: select gene list

Gene List
scRNASeq
Spatial Transcriptomics

Input Genes

Choose a subsection

Dimensions

Choose file Only .csv and .h5ad file types accepted for online analysis. Download Demo (Detail of Demo dataset ).

Top 10 Enriched Dimensions

Top 30 Enriched Dimensions

List of Enriched Dimensions

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Tag
Intersect gene num
p val
p val adj

Part08: Mammoth, MArkers Map for Model animal and OrTHlogous species

Marker

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entries

Download this file

Search:

Part09: Eft, Enrichment of celltype DEG

ToppGene enrichment

Gene list
ToppGene enrichment
PPI
Motif enrichment

Celltype: cell type; Symbol: gene symbol; p_val: p value; avg_log2FC: average logfc between two groups; p_val_adj: adjusted p-value;

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Toppgen enrichment analysis of genelist

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Category
ID
Name
PValue
QValueFDRBH
QValueFDRBY
Detail