Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 49)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45571)	% of Background Sequences with Motif
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-3	-8.072e+00	0.1373	19.0	38.78%	7897.4	17.33%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-6.381e+00	0.3724	25.0	51.02%	13689.0	30.04%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-6.059e+00	0.3724	19.0	38.78%	9262.2	20.32%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-2	-6.010e+00	0.3724	25.0	51.02%	14023.9	30.77%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-2	-5.955e+00	0.3724	18.0	36.73%	8605.6	18.88%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-5.058e+00	0.4661	16.0	32.65%	7842.4	17.21%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-4.812e+00	0.5110	19.0	38.78%	10318.9	22.64%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-4.386e+00	0.6848	20.0	40.82%	11529.6	25.30%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-4.274e+00	0.6848	14.0	28.57%	7029.3	15.42%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-4.253e+00	0.6848	35.0	71.43%	25094.1	55.06%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-3.786e+00	0.9071	37.0	75.51%	27720.7	60.83%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.724e+00	0.9071	16.0	32.65%	9051.4	19.86%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.720e+00	0.9071	4.0	8.16%	1022.2	2.24%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-3.438e+00	1.0000	10.0	20.41%	4862.2	10.67%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-1	-3.411e+00	1.0000	35.0	71.43%	26250.7	57.60%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.396e+00	1.0000	9.0	18.37%	4201.6	9.22%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-3.370e+00	1.0000	18.0	36.73%	11039.6	24.22%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.233e+00	1.0000	31.0	63.27%	22661.4	49.73%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.151e+00	1.0000	15.0	30.61%	8889.2	19.51%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-1	-3.141e+00	1.0000	27.0	55.10%	19106.0	41.92%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.671e+00	1.0000	14.0	28.57%	8669.6	19.02%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.623e+00	1.0000	14.0	28.57%	8729.4	19.16%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.598e+00	1.0000	11.0	22.45%	6397.5	14.04%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-2.596e+00	1.0000	6.0	12.24%	2760.2	6.06%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-2.545e+00	1.0000	42.0	85.71%	34772.6	76.30%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.518e+00	1.0000	31.0	63.27%	23822.1	52.27%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.487e+00	1.0000	25.0	51.02%	18344.1	40.25%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.398e+00	1.0000	15.0	30.61%	9847.2	21.61%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.383e+00	1.0000	9.0	18.37%	5106.0	11.20%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.374e+00	1.0000	17.0	34.69%	11551.3	25.35%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.365e+00	1.0000	4.0	8.16%	1606.5	3.53%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.364e+00	1.0000	2.0	4.08%	478.7	1.05%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.360e+00	1.0000	3.0	6.12%	1007.5	2.21%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.358e+00	1.0000	21.0	42.86%	15014.1	32.95%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.354e+00	1.0000	29.0	59.18%	22241.1	48.80%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-2.334e+00	1.0000	22.0	44.90%	15933.8	34.96%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.304e+00	1.0000	24.0	48.98%	17766.0	38.98%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.297e+00	1.0000	16.0	32.65%	10828.7	23.76%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.294e+00	1.0000	9.0	18.37%	5202.4	11.42%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-2.289e+00	1.0000	12.0	24.49%	7557.0	16.58%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.251e+00	1.0000	37.0	75.51%	30119.5	66.09%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-2.239e+00	1.0000	10.0	20.41%	6037.5	13.25%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-2.226e+00	1.0000	17.0	34.69%	11783.2	25.86%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.186e+00	1.0000	10.0	20.41%	6101.6	13.39%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.136e+00	1.0000	12.0	24.49%	7763.0	17.03%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.124e+00	1.0000	7.0	14.29%	3875.7	8.50%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.102e+00	1.0000	12.0	24.49%	7811.1	17.14%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.099e+00	1.0000	4.0	8.16%	1771.8	3.89%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.003e+00	1.0000	16.0	32.65%	11299.5	24.79%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.974e+00	1.0000	9.0	18.37%	5578.9	12.24%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.968e+00	1.0000	17.0	34.69%	12217.5	26.81%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.927e+00	1.0000	14.0	28.57%	9732.7	21.36%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.922e+00	1.0000	12.0	24.49%	8073.0	17.71%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.881e+00	1.0000	22.0	44.90%	16772.5	36.80%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.861e+00	1.0000	17.0	34.69%	12408.6	27.23%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.845e+00	1.0000	6.0	12.24%	3411.3	7.49%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.841e+00	1.0000	35.0	71.43%	28952.2	63.53%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.839e+00	1.0000	10.0	20.41%	6559.8	14.39%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.824e+00	1.0000	12.0	24.49%	8225.4	18.05%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.804e+00	1.0000	6.0	12.24%	3454.5	7.58%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.803e+00	1.0000	20.0	40.82%	15147.7	33.24%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.792e+00	1.0000	14.0	28.57%	9959.8	21.85%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.788e+00	1.0000	17.0	34.69%	12544.6	27.53%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.780e+00	1.0000	17.0	34.69%	12559.7	27.56%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.775e+00	1.0000	17.0	34.69%	12570.9	27.58%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.762e+00	1.0000	15.0	30.61%	10866.8	23.84%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.757e+00	1.0000	5.0	10.20%	2751.7	6.04%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.751e+00	1.0000	42.0	85.71%	36104.8	79.22%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.740e+00	1.0000	8.0	16.33%	5087.2	11.16%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.740e+00	1.0000	23.0	46.94%	17962.7	39.42%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.714e+00	1.0000	13.0	26.53%	9247.5	20.29%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.705e+00	1.0000	7.0	14.29%	4340.2	9.52%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.701e+00	1.0000	24.0	48.98%	18952.9	41.59%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.699e+00	1.0000	14.0	28.57%	10125.0	22.22%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.689e+00	1.0000	12.0	24.49%	8447.7	18.54%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.676e+00	1.0000	2.0	4.08%	734.5	1.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.647e+00	1.0000	4.0	8.16%	2117.5	4.65%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.647e+00	1.0000	31.0	63.27%	25554.3	56.07%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.637e+00	1.0000	19.0	38.78%	14603.0	32.04%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.628e+00	1.0000	13.0	26.53%	9400.1	20.63%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-1.611e+00	1.0000	12.0	24.49%	8580.9	18.83%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.606e+00	1.0000	4.0	8.16%	2154.6	4.73%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.582e+00	1.0000	28.0	57.14%	22896.3	50.24%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.582e+00	1.0000	20.0	40.82%	15610.5	34.25%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.573e+00	1.0000	11.0	22.45%	7802.3	17.12%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.562e+00	1.0000	16.0	32.65%	12117.4	26.59%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.560e+00	1.0000	24.0	48.98%	19270.7	42.29%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.551e+00	1.0000	13.0	26.53%	9541.4	20.94%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.523e+00	1.0000	28.0	57.14%	23037.2	50.55%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.501e+00	1.0000	14.0	28.57%	10500.5	23.04%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.489e+00	1.0000	6.0	12.24%	3820.3	8.38%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.489e+00	1.0000	5.0	10.20%	3032.6	6.65%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.484e+00	1.0000	3.0	6.12%	1529.7	3.36%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.481e+00	1.0000	18.0	36.73%	14052.3	30.84%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.476e+00	1.0000	8.0	16.33%	5461.3	11.98%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.474e+00	1.0000	22.0	44.90%	17654.2	38.74%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.421e+00	1.0000	24.0	48.98%	19601.9	43.01%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.418e+00	1.0000	10.0	20.41%	7229.6	15.86%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.416e+00	1.0000	31.0	63.27%	26103.4	57.28%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.384e+00	1.0000	10.0	20.41%	7289.2	15.99%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.382e+00	1.0000	2.0	4.08%	896.7	1.97%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.372e+00	1.0000	7.0	14.29%	4794.5	10.52%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.329e+00	1.0000	22.0	44.90%	18010.5	39.52%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.327e+00	1.0000	31.0	63.27%	26331.8	57.78%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.323e+00	1.0000	9.0	18.37%	6551.5	14.38%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.322e+00	1.0000	24.0	48.98%	19854.4	43.57%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.319e+00	1.0000	6.0	12.24%	4050.1	8.89%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.313e+00	1.0000	8.0	16.33%	5722.2	12.56%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.312e+00	1.0000	1.0	2.04%	290.4	0.64%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.307e+00	1.0000	11.0	22.45%	8294.9	18.20%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.303e+00	1.0000	23.0	46.94%	18988.1	41.67%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.290e+00	1.0000	8.0	16.33%	5762.1	12.64%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.279e+00	1.0000	8.0	16.33%	5781.1	12.69%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.276e+00	1.0000	24.0	48.98%	19973.6	43.83%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.274e+00	1.0000	18.0	36.73%	14540.1	31.91%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.270e+00	1.0000	3.0	6.12%	1716.6	3.77%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.269e+00	1.0000	2.0	4.08%	971.2	2.13%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.222e+00	1.0000	10.0	20.41%	7599.7	16.68%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.221e+00	1.0000	2.0	4.08%	1006.4	2.21%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.219e+00	1.0000	8.0	16.33%	5887.0	12.92%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.219e+00	1.0000	25.0	51.02%	21048.0	46.19%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.218e+00	1.0000	6.0	12.24%	4201.6	9.22%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.215e+00	1.0000	4.0	8.16%	2562.7	5.62%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.208e+00	1.0000	3.0	6.12%	1777.1	3.90%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.205e+00	1.0000	3.0	6.12%	1780.3	3.91%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.201e+00	1.0000	7.0	14.29%	5068.7	11.12%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.200e+00	1.0000	3.0	6.12%	1785.3	3.92%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.196e+00	1.0000	6.0	12.24%	4234.4	9.29%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.192e+00	1.0000	7.0	14.29%	5084.9	11.16%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.152e+00	1.0000	6.0	12.24%	4305.3	9.45%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.149e+00	1.0000	21.0	42.86%	17582.0	38.58%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-1.138e+00	1.0000	14.0	28.57%	11305.7	24.81%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.133e+00	1.0000	12.0	24.49%	9542.6	20.94%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.130e+00	1.0000	40.0	81.63%	35423.9	77.73%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.128e+00	1.0000	14.0	28.57%	11330.6	24.86%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.117e+00	1.0000	15.0	30.61%	12251.0	26.88%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.111e+00	1.0000	26.0	53.06%	22276.5	48.88%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.109e+00	1.0000	4.0	8.16%	2697.1	5.92%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.100e+00	1.0000	3.0	6.12%	1892.0	4.15%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.099e+00	1.0000	3.0	6.12%	1893.9	4.16%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.090e+00	1.0000	8.0	16.33%	6131.0	13.45%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.078e+00	1.0000	2.0	4.08%	1120.9	2.46%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.073e+00	1.0000	20.0	40.82%	16888.9	37.06%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.064e+00	1.0000	3.0	6.12%	1933.5	4.24%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-1.059e+00	1.0000	5.0	10.20%	3609.7	7.92%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.055e+00	1.0000	23.0	46.94%	19682.8	43.19%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.053e+00	1.0000	16.0	32.65%	13319.2	29.23%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.053e+00	1.0000	14.0	28.57%	11521.9	25.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.052e+00	1.0000	13.0	26.53%	10629.6	23.32%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.034e+00	1.0000	10.0	20.41%	8006.8	17.57%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.027e+00	1.0000	2.0	4.08%	1166.3	2.56%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.005e+00	1.0000	3.0	6.12%	2003.2	4.40%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.836e-01	1.0000	11.0	22.45%	9016.7	19.79%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.658e-01	1.0000	2.0	4.08%	1224.8	2.69%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-9.657e-01	1.0000	10.0	20.41%	8168.3	17.92%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.545e-01	1.0000	6.0	12.24%	4655.7	10.22%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-9.501e-01	1.0000	4.0	8.16%	2926.2	6.42%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-9.495e-01	1.0000	10.0	20.41%	8208.1	18.01%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.494e-01	1.0000	3.0	6.12%	2074.2	4.55%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-9.445e-01	1.0000	18.0	36.73%	15450.7	33.90%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.404e-01	1.0000	7.0	14.29%	5563.4	12.21%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-9.304e-01	1.0000	4.0	8.16%	2957.7	6.49%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-9.297e-01	1.0000	16.0	32.65%	13675.1	30.01%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.078e-01	1.0000	3.0	6.12%	2130.7	4.68%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-9.070e-01	1.0000	7.0	14.29%	5635.4	12.37%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.962e-01	1.0000	3.0	6.12%	2146.7	4.71%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-8.962e-01	1.0000	6.0	12.24%	4771.1	10.47%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-8.782e-01	1.0000	7.0	14.29%	5699.5	12.51%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.778e-01	1.0000	6.0	12.24%	4809.8	10.55%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-8.715e-01	1.0000	5.0	10.20%	3935.0	8.63%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-8.683e-01	1.0000	32.0	65.31%	28618.9	62.80%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.680e-01	1.0000	11.0	22.45%	9323.0	20.46%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.654e-01	1.0000	7.0	14.29%	5728.1	12.57%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.468e-01	1.0000	8.0	16.33%	6670.5	14.64%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-8.441e-01	1.0000	1.0	2.04%	519.6	1.14%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.301e-01	1.0000	5.0	10.20%	4016.6	8.81%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-8.301e-01	1.0000	5.0	10.20%	4016.5	8.81%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-8.275e-01	1.0000	11.0	22.45%	9437.8	20.71%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-8.252e-01	1.0000	25.0	51.02%	22281.4	48.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.238e-01	1.0000	2.0	4.08%	1378.2	3.02%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.238e-01	1.0000	2.0	4.08%	1378.2	3.02%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.229e-01	1.0000	2.0	4.08%	1379.4	3.03%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-8.197e-01	1.0000	8.0	16.33%	6738.4	14.79%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.174e-01	1.0000	13.0	26.53%	11289.6	24.77%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.138e-01	1.0000	2.0	4.08%	1390.3	3.05%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.082e-01	1.0000	6.0	12.24%	4960.2	10.88%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.052e-01	1.0000	37.0	75.51%	33490.2	73.49%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-7.931e-01	1.0000	1.0	2.04%	556.4	1.22%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-7.793e-01	1.0000	20.0	40.82%	17839.5	39.15%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.735e-01	1.0000	3.0	6.12%	2331.2	5.12%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-7.657e-01	1.0000	19.0	38.78%	16968.2	37.23%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-7.466e-01	1.0000	7.0	14.29%	6017.6	13.20%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.357e-01	1.0000	1.0	2.04%	603.0	1.32%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.168e-01	1.0000	3.0	6.12%	2427.4	5.33%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-7.151e-01	1.0000	3.0	6.12%	2430.0	5.33%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.117e-01	1.0000	3.0	6.12%	2436.3	5.35%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.076e-01	1.0000	30.0	61.22%	27347.2	60.01%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.058e-01	1.0000	19.0	38.78%	17194.5	37.73%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.036e-01	1.0000	26.0	53.06%	23667.1	51.93%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.012e-01	1.0000	22.0	44.90%	19982.1	43.85%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.993e-01	1.0000	6.0	12.24%	5222.0	11.46%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.920e-01	1.0000	6.0	12.24%	5240.2	11.50%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.906e-01	1.0000	3.0	6.12%	2475.0	5.43%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-6.797e-01	1.0000	1.0	2.04%	652.2	1.43%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.738e-01	1.0000	3.0	6.12%	2505.7	5.50%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-6.633e-01	1.0000	19.0	38.78%	17363.0	38.10%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.592e-01	1.0000	13.0	26.53%	11824.8	25.95%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.502e-01	1.0000	2.0	4.08%	1614.3	3.54%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.390e-01	1.0000	15.0	30.61%	13756.2	30.19%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-6.386e-01	1.0000	6.0	12.24%	5383.8	11.81%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-6.369e-01	1.0000	14.0	28.57%	12836.3	28.17%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-6.359e-01	1.0000	23.0	46.94%	21177.9	46.47%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.331e-01	1.0000	14.0	28.57%	12851.3	28.20%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.251e-01	1.0000	3.0	6.12%	2600.6	5.71%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.235e-01	1.0000	5.0	10.20%	4487.2	9.85%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.204e-01	1.0000	21.0	42.86%	19394.4	42.56%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-6.104e-01	1.0000	9.0	18.37%	8276.1	18.16%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-5.999e-01	1.0000	15.0	30.61%	13914.4	30.53%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.961e-01	1.0000	1.0	2.04%	739.0	1.62%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.937e-01	1.0000	9.0	18.37%	8334.9	18.29%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.925e-01	1.0000	11.0	22.45%	10212.0	22.41%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.751e-01	1.0000	2.0	4.08%	1739.9	3.82%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.721e-01	1.0000	9.0	18.37%	8412.0	18.46%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-5.681e-01	1.0000	13.0	26.53%	12180.0	26.73%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.640e-01	1.0000	22.0	44.90%	20574.7	45.15%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.582e-01	1.0000	11.0	22.45%	10345.0	22.70%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.577e-01	1.0000	1.0	2.04%	783.9	1.72%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-5.570e-01	1.0000	11.0	22.45%	10350.5	22.71%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-5.544e-01	1.0000	30.0	61.22%	27997.5	61.43%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-5.540e-01	1.0000	6.0	12.24%	5633.6	12.36%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-5.526e-01	1.0000	21.0	42.86%	19701.4	43.23%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.493e-01	1.0000	27.0	55.10%	25262.5	55.43%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-5.478e-01	1.0000	11.0	22.45%	10387.2	22.79%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.455e-01	1.0000	7.0	14.29%	6613.7	14.51%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.351e-01	1.0000	9.0	18.37%	8549.6	18.76%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.304e-01	1.0000	9.0	18.37%	8567.7	18.80%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.267e-01	1.0000	9.0	18.37%	8581.4	18.83%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.253e-01	1.0000	3.0	6.12%	2820.4	6.19%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.202e-01	1.0000	1.0	2.04%	831.5	1.82%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.202e-01	1.0000	1.0	2.04%	831.5	1.82%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.195e-01	1.0000	1.0	2.04%	832.3	1.83%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.175e-01	1.0000	39.0	79.59%	36354.3	79.77%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.168e-01	1.0000	9.0	18.37%	8620.8	18.92%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-5.118e-01	1.0000	21.0	42.86%	19899.6	43.67%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-5.099e-01	1.0000	4.0	8.16%	3839.8	8.43%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.050e-01	1.0000	19.0	38.78%	18073.8	39.66%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.922e-01	1.0000	6.0	12.24%	5839.0	12.81%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.792e-01	1.0000	16.0	32.65%	15398.8	33.79%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-4.771e-01	1.0000	22.0	44.90%	21005.4	46.09%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.723e-01	1.0000	19.0	38.78%	18240.6	40.03%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.682e-01	1.0000	12.0	24.49%	11679.3	25.63%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-4.659e-01	1.0000	10.0	20.41%	9786.8	21.48%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-4.646e-01	1.0000	13.0	26.53%	12644.4	27.75%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.639e-01	1.0000	11.0	22.45%	10749.8	23.59%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-4.636e-01	1.0000	8.0	16.33%	7878.0	17.29%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.605e-01	1.0000	6.0	12.24%	5952.8	13.06%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.602e-01	1.0000	3.0	6.12%	2987.3	6.55%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.602e-01	1.0000	8.0	16.33%	7892.6	17.32%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-4.509e-01	1.0000	4.0	8.16%	4016.1	8.81%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.488e-01	1.0000	17.0	34.69%	16493.8	36.19%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.406e-01	1.0000	3.0	6.12%	3042.6	6.68%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.389e-01	1.0000	1.0	2.04%	952.6	2.09%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-4.372e-01	1.0000	11.0	22.45%	10875.9	23.86%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-4.315e-01	1.0000	2.0	4.08%	2036.3	4.47%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.216e-01	1.0000	20.0	40.82%	19450.7	42.68%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.214e-01	1.0000	8.0	16.33%	8059.6	17.69%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.147e-01	1.0000	3.0	6.12%	3119.0	6.84%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-4.121e-01	1.0000	29.0	59.18%	27809.8	61.02%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.040e-01	1.0000	15.0	30.61%	14854.8	32.60%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.034e-01	1.0000	4.0	8.16%	4175.5	9.16%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-4.016e-01	1.0000	27.0	55.10%	26041.8	57.14%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.870e-01	1.0000	4.0	8.16%	4234.5	9.29%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-3.824e-01	1.0000	30.0	61.22%	28892.7	63.40%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.805e-01	1.0000	25.0	51.02%	24331.8	53.39%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.743e-01	1.0000	19.0	38.78%	18798.3	41.25%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.702e-01	1.0000	24.0	48.98%	23474.2	51.51%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.645e-01	1.0000	25.0	51.02%	24432.9	53.61%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.528e-01	1.0000	1.0	2.04%	1114.6	2.45%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-3.501e-01	1.0000	26.0	53.06%	25444.3	55.83%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.486e-01	1.0000	1.0	2.04%	1123.7	2.47%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-3.483e-01	1.0000	12.0	24.49%	12313.5	27.02%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.462e-01	1.0000	13.0	26.53%	13289.0	29.16%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.359e-01	1.0000	10.0	20.41%	10446.9	22.92%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.288e-01	1.0000	3.0	6.12%	3409.2	7.48%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-3.257e-01	1.0000	10.0	20.41%	10506.5	23.05%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.253e-01	1.0000	2.0	4.08%	2332.2	5.12%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-3.231e-01	1.0000	15.0	30.61%	15350.8	33.68%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.217e-01	1.0000	6.0	12.24%	6551.9	14.38%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.216e-01	1.0000	2.0	4.08%	2344.3	5.14%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-3.191e-01	1.0000	16.0	32.65%	16329.5	35.83%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.133e-01	1.0000	13.0	26.53%	13498.9	29.62%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.116e-01	1.0000	6.0	12.24%	6603.4	14.49%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.100e-01	1.0000	7.0	14.29%	7623.1	16.73%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.082e-01	1.0000	8.0	16.33%	8635.6	18.95%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.075e-01	1.0000	9.0	18.37%	9632.6	21.14%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-3.075e-01	1.0000	8.0	16.33%	8639.3	18.96%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.011e-01	1.0000	4.0	8.16%	4587.9	10.07%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-2.984e-01	1.0000	16.0	32.65%	16475.3	36.15%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.972e-01	1.0000	25.0	51.02%	24895.9	54.63%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.905e-01	1.0000	12.0	24.49%	12684.9	27.83%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.896e-01	1.0000	8.0	16.33%	8746.2	19.19%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.848e-01	1.0000	2.0	4.08%	2472.4	5.43%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-2.826e-01	1.0000	19.0	38.78%	19431.6	42.64%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.774e-01	1.0000	30.0	61.22%	29587.0	64.92%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.757e-01	1.0000	3.0	6.12%	3628.2	7.96%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.739e-01	1.0000	2.0	4.08%	2513.5	5.52%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.663e-01	1.0000	17.0	34.69%	17669.8	38.77%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.624e-01	1.0000	13.0	26.53%	13860.3	30.41%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.622e-01	1.0000	2.0	4.08%	2559.1	5.62%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.592e-01	1.0000	1.0	2.04%	1353.1	2.97%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.572e-01	1.0000	5.0	10.20%	5868.1	12.88%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.552e-01	1.0000	20.0	40.82%	20590.7	45.18%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-2.542e-01	1.0000	22.0	44.90%	22464.2	49.29%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-2.518e-01	1.0000	10.0	20.41%	10996.8	24.13%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.507e-01	1.0000	2.0	4.08%	2606.5	5.72%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.400e-01	1.0000	1.0	2.04%	1414.9	3.10%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.343e-01	1.0000	5.0	10.20%	6006.5	13.18%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-2.341e-01	1.0000	18.0	36.73%	18888.3	41.45%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-2.334e-01	1.0000	12.0	24.49%	13115.9	28.78%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.308e-01	1.0000	2.0	4.08%	2693.3	5.91%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.280e-01	1.0000	7.0	14.29%	8140.4	17.86%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.233e-01	1.0000	3.0	6.12%	3887.1	8.53%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-2.198e-01	1.0000	15.0	30.61%	16151.1	35.44%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.145e-01	1.0000	1.0	2.04%	1504.0	3.30%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.022e-01	1.0000	9.0	18.37%	10388.2	22.79%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.979e-01	1.0000	13.0	26.53%	14412.2	31.62%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.965e-01	1.0000	1.0	2.04%	1575.4	3.46%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.922e-01	1.0000	1.0	2.04%	1593.2	3.50%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.887e-01	1.0000	1.0	2.04%	1608.8	3.53%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.870e-01	1.0000	13.0	26.53%	14519.5	31.86%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.807e-01	1.0000	31.0	63.27%	31300.3	68.68%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.802e-01	1.0000	1.0	2.04%	1646.7	3.61%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.784e-01	1.0000	8.0	16.33%	9577.6	21.02%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.736e-01	1.0000	6.0	12.24%	7521.2	16.50%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.674e-01	1.0000	2.0	4.08%	3031.5	6.65%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.629e-01	1.0000	4.0	8.16%	5420.3	11.89%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.605e-01	1.0000	9.0	18.37%	10784.8	23.67%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.565e-01	1.0000	11.0	22.45%	12857.5	28.21%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.529e-01	1.0000	3.0	6.12%	4345.9	9.54%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.502e-01	1.0000	21.0	42.86%	22590.9	49.57%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.485e-01	1.0000	18.0	36.73%	19787.8	43.42%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.434e-01	1.0000	1.0	2.04%	1834.6	4.03%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.430e-01	1.0000	15.0	30.61%	16973.9	37.25%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.370e-01	1.0000	2.0	4.08%	3240.3	7.11%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.364e-01	1.0000	11.0	22.45%	13097.0	28.74%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.311e-01	1.0000	12.0	24.49%	14170.9	31.10%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.282e-01	1.0000	3.0	6.12%	4555.5	10.00%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.273e-01	1.0000	2.0	4.08%	3317.9	7.28%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.228e-01	1.0000	17.0	34.69%	19183.4	42.09%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.200e-01	1.0000	2.0	4.08%	3378.2	7.41%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.160e-01	1.0000	7.0	14.29%	9201.0	20.19%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.151e-01	1.0000	22.0	44.90%	24008.1	52.68%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.149e-01	1.0000	3.0	6.12%	4684.8	10.28%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.131e-01	1.0000	3.0	6.12%	4702.4	10.32%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.108e-01	1.0000	3.0	6.12%	4726.9	10.37%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.014e-01	1.0000	8.0	16.33%	10475.8	22.99%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-9.298e-02	1.0000	2.0	4.08%	3642.9	7.99%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-9.134e-02	1.0000	12.0	24.49%	14780.7	32.43%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-9.033e-02	1.0000	1.0	2.04%	2222.0	4.88%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-8.561e-02	1.0000	11.0	22.45%	13868.3	30.43%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-8.365e-02	1.0000	1.0	2.04%	2287.3	5.02%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.113e-02	1.0000	1.0	2.04%	2313.8	5.08%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-8.072e-02	1.0000	16.0	32.65%	18944.0	41.57%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-8.064e-02	1.0000	6.0	12.24%	8628.5	18.93%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-8.062e-02	1.0000	19.0	38.78%	21819.8	47.88%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.677e-02	1.0000	4.0	8.16%	6380.6	14.00%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-7.542e-02	1.0000	14.0	28.57%	17094.0	37.51%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-7.431e-02	1.0000	2.0	4.08%	3872.7	8.50%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-7.224e-02	1.0000	3.0	6.12%	5220.4	11.46%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.110e-02	1.0000	1.0	2.04%	2425.2	5.32%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.963e-02	1.0000	4.0	8.16%	6500.2	14.26%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.774e-02	1.0000	3.0	6.12%	5293.6	11.62%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-6.673e-02	1.0000	1.0	2.04%	2479.0	5.44%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.573e-02	1.0000	2.0	4.08%	3997.7	8.77%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.395e-02	1.0000	7.0	14.29%	10063.3	22.08%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.301e-02	1.0000	9.0	18.37%	12252.8	26.89%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.098e-02	1.0000	9.0	18.37%	12300.4	26.99%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-6.097e-02	1.0000	18.0	36.73%	21325.2	46.79%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-5.686e-02	1.0000	5.0	10.20%	7944.3	17.43%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.635e-02	1.0000	12.0	24.49%	15542.4	34.10%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.635e-02	1.0000	2.0	4.08%	4153.5	9.11%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-5.538e-02	1.0000	19.0	38.78%	22425.2	49.21%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-5.395e-02	1.0000	21.0	42.86%	24335.8	53.40%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.721e-02	1.0000	3.0	6.12%	5697.3	12.50%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.243e-02	1.0000	19.0	38.78%	22831.2	50.10%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.933e-02	1.0000	14.0	28.57%	18098.1	39.71%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.650e-02	1.0000	28.0	57.14%	31137.9	68.33%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.596e-02	1.0000	8.0	16.33%	11957.0	26.24%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.469e-02	1.0000	1.0	2.04%	3037.1	6.66%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.264e-02	1.0000	8.0	16.33%	12085.9	26.52%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.256e-02	1.0000	1.0	2.04%	3091.1	6.78%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.127e-02	1.0000	3.0	6.12%	6146.8	13.49%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-2.798e-02	1.0000	2.0	4.08%	4850.4	10.64%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.710e-02	1.0000	4.0	8.16%	7611.9	16.70%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-2.668e-02	1.0000	14.0	28.57%	18652.9	40.93%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.469e-02	1.0000	11.0	22.45%	15687.9	34.42%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.464e-02	1.0000	10.0	20.41%	14632.2	32.11%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.322e-02	1.0000	9.0	18.37%	13631.7	29.91%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.260e-02	1.0000	10.0	20.41%	14746.7	32.36%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.812e-02	1.0000	11.0	22.45%	16096.7	35.32%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.569e-02	1.0000	4.0	8.16%	8218.9	18.03%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.444e-02	1.0000	1.0	2.04%	3783.5	8.30%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.122e-02	1.0000	1.0	2.04%	3996.9	8.77%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-8.596e-03	1.0000	5.0	10.20%	10155.1	22.28%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-6.790e-03	1.0000	3.0	6.12%	7716.3	16.93%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.138e-03	1.0000	3.0	6.12%	8197.9	17.99%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	145.1	0.32%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-0.000e+00	1.0000	0.0	0.00%	51.3	0.11%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-0.000e+00	1.0000	0.0	0.00%	1244.6	2.73%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-0.000e+00	1.0000	0.0	0.00%	1725.7	3.79%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-0.000e+00	1.0000	0.0	0.00%	140.7	0.31%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-0.000e+00	1.0000	0.0	0.00%	26.1	0.06%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-0.000e+00	1.0000	0.0	0.00%	1087.2	2.39%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-0.000e+00	1.0000	0.0	0.00%	1612.8	3.54%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	854.9	1.88%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	453.6	1.00%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	0.0	0.00%	453.2	0.99%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	180.1	0.40%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	0.0	0.00%	1804.8	3.96%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	236.4	0.52%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	23.0	0.05%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	270.7	0.59%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	359.7	0.79%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	359.6	0.79%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	122.1	0.27%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	0.000e+00	1.0000	0.0	0.00%	1017.0	2.23%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	387.8	0.85%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	322.6	0.71%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	496.2	1.09%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	647.6	1.42%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	0.000e+00	1.0000	0.0	0.00%	1270.9	2.79%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	0.000e+00	1.0000	0.0	0.00%	1433.6	3.15%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	182.6	0.40%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	131.9	0.29%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	505.4	1.11%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	0.000e+00	1.0000	0.0	0.00%	1205.5	2.65%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	0.000e+00	1.0000	0.0	0.00%	1628.2	3.57%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	185.9	0.41%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	1317.0	2.89%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	575.6	1.26%