Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 48)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 41990)	% of Background Sequences with Motif
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.531e+00	1.0000	26.0	54.17%	14465.6	34.45%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-5.230e+00	1.0000	45.0	93.75%	33215.5	79.10%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.107e+00	1.0000	17.0	35.42%	8047.8	19.17%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-2	-5.100e+00	1.0000	33.0	68.75%	20898.9	49.77%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-4.826e+00	1.0000	8.0	16.67%	2556.8	6.09%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-4.651e+00	1.0000	32.0	66.67%	20492.0	48.80%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-4.314e+00	1.0000	6.0	12.50%	1721.9	4.10%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-4.298e+00	1.0000	27.0	56.25%	16561.7	39.44%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-3.954e+00	1.0000	11.0	22.92%	4854.3	11.56%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.938e+00	1.0000	39.0	81.25%	27977.6	66.63%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.866e+00	1.0000	10.0	20.83%	4270.3	10.17%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-3.828e+00	1.0000	32.0	66.67%	21480.5	51.15%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-3.695e+00	1.0000	8.0	16.67%	3135.5	7.47%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-1	-3.672e+00	1.0000	8.0	16.67%	3149.9	7.50%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.654e+00	1.0000	27.0	56.25%	17332.1	41.28%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.636e+00	1.0000	3.0	6.25%	559.9	1.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.566e+00	1.0000	41.0	85.42%	30481.1	72.59%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.554e+00	1.0000	12.0	25.00%	5836.0	13.90%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-1	-3.527e+00	1.0000	24.0	50.00%	14986.4	35.69%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.456e+00	1.0000	14.0	29.17%	7331.0	17.46%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-1	-3.390e+00	1.0000	10.0	20.83%	4614.9	10.99%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-3.289e+00	1.0000	36.0	75.00%	25895.9	61.67%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-3.132e+00	1.0000	15.0	31.25%	8393.9	19.99%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.123e+00	1.0000	37.0	77.08%	27081.5	64.49%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-3.076e+00	1.0000	32.0	66.67%	22501.6	53.59%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.950e+00	1.0000	25.0	52.08%	16587.0	39.50%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.935e+00	1.0000	18.0	37.50%	10916.2	26.00%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.868e+00	1.0000	8.0	16.67%	3694.8	8.80%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-2.867e+00	1.0000	29.0	60.42%	20144.2	47.97%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.855e+00	1.0000	5.0	10.42%	1832.8	4.36%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.852e+00	1.0000	28.0	58.33%	19294.8	45.95%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.778e+00	1.0000	22.0	45.83%	14337.6	34.14%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.755e+00	1.0000	26.0	54.17%	17719.8	42.20%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.625e+00	1.0000	7.0	14.58%	3222.3	7.67%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.591e+00	1.0000	38.0	79.17%	28823.5	68.64%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.567e+00	1.0000	5.0	10.42%	1994.7	4.75%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.563e+00	1.0000	6.0	12.50%	2621.0	6.24%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.561e+00	1.0000	28.0	58.33%	19745.6	47.02%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-2.540e+00	1.0000	9.0	18.75%	4654.8	11.09%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-2.505e+00	1.0000	13.0	27.08%	7605.3	18.11%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-1	-2.423e+00	1.0000	25.0	52.08%	17388.5	41.41%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.417e+00	1.0000	11.0	22.92%	6218.5	14.81%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.350e+00	1.0000	4.0	8.33%	1519.1	3.62%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-1	-2.330e+00	1.0000	41.0	85.42%	32162.5	76.59%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.304e+00	1.0000	40.0	83.33%	31212.8	74.33%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-2.294e+00	1.0000	16.0	33.33%	10200.4	24.29%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.273e+00	1.0000	35.0	72.92%	26508.7	63.13%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.251e+00	1.0000	25.0	52.08%	17674.3	42.09%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.246e+00	1.0000	12.0	25.00%	7167.9	17.07%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.233e+00	1.0000	27.0	56.25%	19426.5	46.26%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.211e+00	1.0000	41.0	85.42%	32343.7	77.03%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.200e+00	1.0000	11.0	22.92%	6470.6	15.41%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.181e+00	1.0000	23.0	47.92%	16100.2	38.34%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-2.148e+00	1.0000	25.0	52.08%	17854.7	42.52%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.098e+00	1.0000	13.0	27.08%	8129.0	19.36%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.083e+00	1.0000	2.0	4.17%	533.2	1.27%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.046e+00	1.0000	3.0	6.25%	1092.7	2.60%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.043e+00	1.0000	7.0	14.58%	3724.3	8.87%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-2.039e+00	1.0000	7.0	14.58%	3728.6	8.88%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.030e+00	1.0000	15.0	31.25%	9796.0	23.33%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.008e+00	1.0000	4.0	8.33%	1725.2	4.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.004e+00	1.0000	21.0	43.75%	14731.9	35.08%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.999e+00	1.0000	4.0	8.33%	1731.9	4.12%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.972e+00	1.0000	2.0	4.17%	571.4	1.36%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-1.946e+00	1.0000	18.0	37.50%	12353.1	29.42%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.896e+00	1.0000	25.0	52.08%	18317.6	43.62%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.888e+00	1.0000	7.0	14.58%	3882.0	9.24%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.878e+00	1.0000	15.0	31.25%	10036.9	23.90%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.871e+00	1.0000	15.0	31.25%	10047.2	23.93%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.859e+00	1.0000	1.0	2.08%	147.6	0.35%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.857e+00	1.0000	22.0	45.83%	15837.1	37.72%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.854e+00	1.0000	14.0	29.17%	9275.3	22.09%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.849e+00	1.0000	7.0	14.58%	3923.5	9.34%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.820e+00	1.0000	21.0	43.75%	15067.0	35.88%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.788e+00	1.0000	1.0	2.08%	159.7	0.38%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.774e+00	1.0000	39.0	81.25%	31138.5	74.15%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.756e+00	1.0000	31.0	64.58%	23844.6	56.78%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.722e+00	1.0000	27.0	56.25%	20393.9	48.57%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.716e+00	1.0000	25.0	52.08%	18673.0	44.47%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.702e+00	1.0000	15.0	31.25%	10331.6	24.60%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.700e+00	1.0000	12.0	25.00%	7932.7	18.89%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.699e+00	1.0000	8.0	16.67%	4838.5	11.52%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.672e+00	1.0000	33.0	68.75%	25809.8	61.46%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.658e+00	1.0000	22.0	45.83%	16230.0	38.65%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.647e+00	1.0000	33.0	68.75%	25861.2	61.59%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.642e+00	1.0000	10.0	20.83%	6450.2	15.36%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.639e+00	1.0000	12.0	25.00%	8029.5	19.12%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.635e+00	1.0000	12.0	25.00%	8036.0	19.14%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.634e+00	1.0000	20.0	41.67%	14590.7	34.75%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.607e+00	1.0000	14.0	29.17%	9689.8	23.08%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.606e+00	1.0000	2.0	4.17%	723.1	1.72%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.593e+00	1.0000	10.0	20.83%	6523.7	15.54%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.591e+00	1.0000	1.0	2.08%	198.1	0.47%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.573e+00	1.0000	1.0	2.08%	202.6	0.48%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.571e+00	1.0000	11.0	22.92%	7345.7	17.49%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.559e+00	1.0000	20.0	41.67%	14743.4	35.11%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.547e+00	1.0000	23.0	47.92%	17314.5	41.23%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.545e+00	1.0000	6.0	12.50%	3528.2	8.40%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.525e+00	1.0000	26.0	54.17%	19946.1	47.50%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.520e+00	1.0000	10.0	20.83%	6636.8	15.81%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.514e+00	1.0000	10.0	20.83%	6646.7	15.83%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.508e+00	1.0000	7.0	14.58%	4326.4	10.30%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.491e+00	1.0000	29.0	60.42%	22642.4	53.92%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.490e+00	1.0000	9.0	18.75%	5897.6	14.04%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.483e+00	1.0000	10.0	20.83%	6695.3	15.94%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.472e+00	1.0000	13.0	27.08%	9122.9	21.73%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.448e+00	1.0000	10.0	20.83%	6751.8	16.08%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.440e+00	1.0000	14.0	29.17%	9998.9	23.81%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.411e+00	1.0000	8.0	16.67%	5233.9	12.46%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.398e+00	1.0000	41.0	85.42%	33735.8	80.34%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.391e+00	1.0000	32.0	66.67%	25529.6	60.80%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.383e+00	1.0000	18.0	37.50%	13435.9	32.00%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.377e+00	1.0000	8.0	16.67%	5284.9	12.59%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.375e+00	1.0000	22.0	45.83%	16844.3	40.11%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.357e+00	1.0000	6.0	12.50%	3759.8	8.95%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.340e+00	1.0000	14.0	29.17%	10196.9	24.28%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.339e+00	1.0000	17.0	35.42%	12693.0	30.23%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.333e+00	1.0000	14.0	29.17%	10210.1	24.31%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.324e+00	1.0000	12.0	25.00%	8586.3	20.45%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.320e+00	1.0000	9.0	18.75%	6168.4	14.69%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.318e+00	1.0000	20.0	41.67%	15273.3	36.37%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.311e+00	1.0000	4.0	8.33%	2305.2	5.49%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.308e+00	1.0000	26.0	54.17%	20453.2	48.71%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.301e+00	1.0000	3.0	6.25%	1586.9	3.78%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.300e+00	1.0000	9.0	18.75%	6202.7	14.77%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.287e+00	1.0000	8.0	16.67%	5425.4	12.92%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.264e+00	1.0000	15.0	31.25%	11188.6	26.65%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.260e+00	1.0000	8.0	16.67%	5469.2	13.02%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.256e+00	1.0000	21.0	43.75%	16274.7	38.76%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.251e+00	1.0000	22.0	45.83%	17142.9	40.83%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.239e+00	1.0000	17.0	35.42%	12921.6	30.77%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.238e+00	1.0000	26.0	54.17%	20630.9	49.13%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.231e+00	1.0000	7.0	14.58%	4721.6	11.24%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.229e+00	1.0000	23.0	47.92%	18057.1	43.00%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.227e+00	1.0000	12.0	25.00%	8778.1	20.90%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.201e+00	1.0000	6.0	12.50%	3976.5	9.47%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.175e+00	1.0000	25.0	52.08%	19924.3	47.45%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.173e+00	1.0000	30.0	62.50%	24297.5	57.86%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.170e+00	1.0000	8.0	16.67%	5622.6	13.39%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.138e+00	1.0000	9.0	18.75%	6493.6	15.46%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.138e+00	1.0000	6.0	12.50%	4071.2	9.70%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.131e+00	1.0000	3.0	6.25%	1747.9	4.16%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.129e+00	1.0000	5.0	10.42%	3292.1	7.84%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.079e+00	1.0000	11.0	22.92%	8264.5	19.68%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.078e+00	1.0000	21.0	43.75%	16735.8	39.86%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.077e+00	1.0000	10.0	20.83%	7438.6	17.71%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.076e+00	1.0000	17.0	35.42%	13320.2	31.72%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.062e+00	1.0000	6.0	12.50%	4193.2	9.99%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.050e+00	1.0000	8.0	16.67%	5843.9	13.92%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.047e+00	1.0000	8.0	16.67%	5850.7	13.93%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.037e+00	1.0000	4.0	8.33%	2632.0	6.27%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.031e+00	1.0000	9.0	18.75%	6706.5	15.97%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.029e+00	1.0000	3.0	6.25%	1856.6	4.42%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.023e+00	1.0000	3.0	6.25%	1863.0	4.44%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.021e+00	1.0000	15.0	31.25%	11765.5	28.02%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.007e+00	1.0000	1.0	2.08%	395.3	0.94%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-9.980e-01	1.0000	28.0	58.33%	23030.2	54.85%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-9.973e-01	1.0000	13.0	27.08%	10133.0	24.13%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-9.956e-01	1.0000	3.0	6.25%	1895.1	4.51%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-9.910e-01	1.0000	22.0	45.83%	17841.3	42.49%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.900e-01	1.0000	27.0	56.25%	22181.8	52.82%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.647e-01	1.0000	26.0	54.17%	21386.1	50.93%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.606e-01	1.0000	2.0	4.17%	1156.9	2.76%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-9.520e-01	1.0000	6.0	12.50%	4383.9	10.44%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.508e-01	1.0000	3.0	6.25%	1949.7	4.64%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-9.455e-01	1.0000	6.0	12.50%	4395.4	10.47%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.395e-01	1.0000	2.0	4.17%	1176.0	2.80%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.299e-01	1.0000	3.0	6.25%	1975.4	4.70%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-9.299e-01	1.0000	24.0	50.00%	19755.7	47.05%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.291e-01	1.0000	3.0	6.25%	1976.4	4.71%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.259e-01	1.0000	5.0	10.42%	3606.6	8.59%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-9.100e-01	1.0000	4.0	8.33%	2812.3	6.70%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.074e-01	1.0000	4.0	8.33%	2816.9	6.71%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-8.967e-01	1.0000	13.0	27.08%	10395.2	24.76%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.881e-01	1.0000	2.0	4.17%	1227.6	2.92%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-8.822e-01	1.0000	18.0	37.50%	14720.9	35.06%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-8.770e-01	1.0000	18.0	37.50%	14736.4	35.09%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-8.759e-01	1.0000	39.0	81.25%	33075.7	78.77%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-8.670e-01	1.0000	8.0	16.67%	6227.8	14.83%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-8.661e-01	1.0000	25.0	52.08%	20825.1	49.59%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-8.530e-01	1.0000	17.0	35.42%	13949.4	33.22%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.505e-01	1.0000	3.0	6.25%	2080.5	4.95%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-8.502e-01	1.0000	13.0	27.08%	10524.4	25.06%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.498e-01	1.0000	17.0	35.42%	13959.8	33.24%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-8.469e-01	1.0000	33.0	68.75%	27869.5	66.37%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.443e-01	1.0000	12.0	25.00%	9685.2	23.06%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-8.247e-01	1.0000	2.0	4.17%	1295.7	3.09%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-8.237e-01	1.0000	8.0	16.67%	6328.2	15.07%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.215e-01	1.0000	32.0	66.67%	27074.6	64.48%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.186e-01	1.0000	5.0	10.42%	3799.3	9.05%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.932e-01	1.0000	2.0	4.17%	1331.8	3.17%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.890e-01	1.0000	7.0	14.58%	5558.7	13.24%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.882e-01	1.0000	3.0	6.25%	2170.3	5.17%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-7.873e-01	1.0000	9.0	18.75%	7272.1	17.32%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.867e-01	1.0000	10.0	20.83%	8131.9	19.37%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-7.847e-01	1.0000	16.0	33.33%	13303.0	31.68%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.818e-01	1.0000	21.0	43.75%	17637.6	42.00%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.747e-01	1.0000	19.0	39.58%	15929.3	37.93%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-7.737e-01	1.0000	1.0	2.08%	537.2	1.28%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.697e-01	1.0000	12.0	25.00%	9899.9	23.58%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.647e-01	1.0000	2.0	4.17%	1366.0	3.25%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.643e-01	1.0000	1.0	2.08%	544.3	1.30%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-7.486e-01	1.0000	1.0	2.08%	556.2	1.32%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-7.380e-01	1.0000	7.0	14.58%	5680.7	13.53%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-7.370e-01	1.0000	12.0	25.00%	9998.4	23.81%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.344e-01	1.0000	8.0	16.67%	6551.0	15.60%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.219e-01	1.0000	11.0	22.92%	9179.9	21.86%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.185e-01	1.0000	1.0	2.08%	580.7	1.38%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.085e-01	1.0000	4.0	8.33%	3160.0	7.53%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-6.979e-01	1.0000	20.0	41.67%	17068.9	40.65%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.902e-01	1.0000	9.0	18.75%	7539.8	17.96%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.878e-01	1.0000	5.0	10.42%	4069.8	9.69%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-6.834e-01	1.0000	8.0	16.67%	6689.9	15.93%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.703e-01	1.0000	10.0	20.83%	8469.9	20.17%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.663e-01	1.0000	15.0	31.25%	12837.4	30.57%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-6.641e-01	1.0000	5.0	10.42%	4123.0	9.82%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.619e-01	1.0000	2.0	4.17%	1501.1	3.57%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.607e-01	1.0000	16.0	33.33%	13728.1	32.69%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-6.515e-01	1.0000	10.0	20.83%	8528.6	20.31%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.501e-01	1.0000	2.0	4.17%	1518.6	3.62%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.488e-01	1.0000	22.0	45.83%	18994.5	45.23%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.414e-01	1.0000	14.0	29.17%	12055.9	28.71%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-6.399e-01	1.0000	9.0	18.75%	7690.3	18.31%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.395e-01	1.0000	23.0	47.92%	19900.6	47.39%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.254e-01	1.0000	2.0	4.17%	1555.2	3.70%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.236e-01	1.0000	3.0	6.25%	2448.8	5.83%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-6.190e-01	1.0000	23.0	47.92%	19983.2	47.59%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-6.188e-01	1.0000	24.0	50.00%	20853.9	49.66%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-6.179e-01	1.0000	7.0	14.58%	5999.8	14.29%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-6.176e-01	1.0000	6.0	12.50%	5118.9	12.19%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-6.061e-01	1.0000	6.0	12.50%	5149.3	12.26%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-6.030e-01	1.0000	10.0	20.83%	8687.7	20.69%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.961e-01	1.0000	1.0	2.08%	694.9	1.65%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-5.923e-01	1.0000	8.0	16.67%	6959.1	16.57%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-5.899e-01	1.0000	2.0	4.17%	1611.6	3.84%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.857e-01	1.0000	4.0	8.33%	3421.4	8.15%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-5.845e-01	1.0000	27.0	56.25%	23599.5	56.20%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.743e-01	1.0000	14.0	29.17%	12308.7	29.31%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.719e-01	1.0000	6.0	12.50%	5245.4	12.49%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-5.697e-01	1.0000	14.0	29.17%	12326.8	29.36%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.632e-01	1.0000	3.0	6.25%	2569.5	6.12%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-5.519e-01	1.0000	29.0	60.42%	25469.5	60.65%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-5.486e-01	1.0000	8.0	16.67%	7101.7	16.91%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-5.470e-01	1.0000	12.0	25.00%	10654.7	25.37%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-5.447e-01	1.0000	11.0	22.92%	9779.9	23.29%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-5.434e-01	1.0000	22.0	45.83%	19436.7	46.29%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-5.382e-01	1.0000	5.0	10.42%	4443.8	10.58%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-5.373e-01	1.0000	7.0	14.58%	6245.7	14.87%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.340e-01	1.0000	2.0	4.17%	1707.1	4.07%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.268e-01	1.0000	2.0	4.17%	1720.2	4.10%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.257e-01	1.0000	3.0	6.25%	2651.6	6.31%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.253e-01	1.0000	6.0	12.50%	5384.1	12.82%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.228e-01	1.0000	4.0	8.33%	3576.0	8.52%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-5.188e-01	1.0000	22.0	45.83%	19548.5	46.55%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.156e-01	1.0000	3.0	6.25%	2674.1	6.37%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-5.137e-01	1.0000	13.0	27.08%	11673.0	27.80%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-4.978e-01	1.0000	2.0	4.17%	1775.2	4.23%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.857e-01	1.0000	5.0	10.42%	4597.1	10.95%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.734e-01	1.0000	31.0	64.58%	27543.1	65.59%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-4.708e-01	1.0000	7.0	14.58%	6473.7	15.42%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.641e-01	1.0000	5.0	10.42%	4665.7	11.11%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.636e-01	1.0000	6.0	12.50%	5586.9	13.30%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-4.619e-01	1.0000	18.0	37.50%	16321.5	38.87%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-4.589e-01	1.0000	23.0	47.92%	20708.1	49.32%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.548e-01	1.0000	5.0	10.42%	4695.5	11.18%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.499e-01	1.0000	5.0	10.42%	4711.5	11.22%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-4.429e-01	1.0000	17.0	35.42%	15535.2	37.00%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-4.429e-01	1.0000	11.0	22.92%	10199.4	24.29%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-4.344e-01	1.0000	13.0	27.08%	12029.1	28.65%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.140e-01	1.0000	4.0	8.33%	3891.0	9.27%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.138e-01	1.0000	15.0	31.25%	13913.3	33.13%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.138e-01	1.0000	24.0	50.00%	21814.4	51.95%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.118e-01	1.0000	1.0	2.08%	939.6	2.24%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.047e-01	1.0000	10.0	20.83%	9472.6	22.56%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.025e-01	1.0000	9.0	18.75%	8573.4	20.42%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-4.013e-01	1.0000	12.0	25.00%	11295.5	26.90%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.996e-01	1.0000	3.0	6.25%	2976.8	7.09%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.979e-01	1.0000	6.0	12.50%	5829.6	13.88%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.975e-01	1.0000	2.0	4.17%	1995.8	4.75%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.975e-01	1.0000	3.0	6.25%	2982.9	7.10%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.948e-01	1.0000	15.0	31.25%	14013.8	33.37%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.852e-01	1.0000	2.0	4.17%	2026.6	4.83%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.833e-01	1.0000	3.0	6.25%	3025.2	7.20%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.796e-01	1.0000	6.0	12.50%	5903.5	14.06%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.746e-01	1.0000	1.0	2.08%	1005.1	2.39%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-3.709e-01	1.0000	15.0	31.25%	14144.3	33.68%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.677e-01	1.0000	16.0	33.33%	15053.5	35.85%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.669e-01	1.0000	2.0	4.17%	2074.1	4.94%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.659e-01	1.0000	13.0	27.08%	12380.6	29.48%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.635e-01	1.0000	2.0	4.17%	2083.3	4.96%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-3.552e-01	1.0000	4.0	8.33%	4095.1	9.75%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.544e-01	1.0000	2.0	4.17%	2108.7	5.02%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.531e-01	1.0000	1.0	2.08%	1047.3	2.49%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.491e-01	1.0000	1.0	2.08%	1055.8	2.51%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-3.478e-01	1.0000	17.0	35.42%	16059.8	38.25%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.463e-01	1.0000	9.0	18.75%	8845.9	21.07%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.442e-01	1.0000	6.0	12.50%	6055.9	14.42%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-3.437e-01	1.0000	9.0	18.75%	8858.3	21.10%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.411e-01	1.0000	2.0	4.17%	2146.8	5.11%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.406e-01	1.0000	7.0	14.58%	7014.3	16.70%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-3.404e-01	1.0000	8.0	16.67%	7949.7	18.93%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.366e-01	1.0000	10.0	20.83%	9816.1	23.38%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.366e-01	1.0000	3.0	6.25%	3178.2	7.57%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.349e-01	1.0000	23.0	47.92%	21409.1	50.98%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.258e-01	1.0000	14.0	29.17%	13513.9	32.18%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.252e-01	1.0000	1.0	2.08%	1106.7	2.64%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.185e-01	1.0000	13.0	27.08%	12655.9	30.14%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-3.159e-01	1.0000	19.0	39.58%	18030.9	42.94%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.145e-01	1.0000	16.0	33.33%	15377.6	36.62%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.057e-01	1.0000	6.0	12.50%	6237.7	14.85%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.015e-01	1.0000	4.0	8.33%	4311.4	10.27%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.986e-01	1.0000	7.0	14.58%	7227.2	17.21%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.982e-01	1.0000	16.0	33.33%	15485.5	36.88%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-2.977e-01	1.0000	10.0	20.83%	10039.0	23.91%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.968e-01	1.0000	20.0	41.67%	19040.7	45.34%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.873e-01	1.0000	9.0	18.75%	9173.1	21.85%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-2.829e-01	1.0000	16.0	33.33%	15590.3	37.13%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.777e-01	1.0000	5.0	10.42%	5409.4	12.88%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.752e-01	1.0000	6.0	12.50%	6396.5	15.23%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.700e-01	1.0000	9.0	18.75%	9280.8	22.10%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-2.698e-01	1.0000	16.0	33.33%	15685.0	37.35%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-2.689e-01	1.0000	3.0	6.25%	3440.2	8.19%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.686e-01	1.0000	36.0	75.00%	32820.4	78.16%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-2.574e-01	1.0000	21.0	43.75%	20207.7	48.12%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.543e-01	1.0000	9.0	18.75%	9382.8	22.34%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.436e-01	1.0000	30.0	62.50%	28031.6	66.76%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-2.435e-01	1.0000	10.0	20.83%	10394.1	24.75%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.413e-01	1.0000	4.0	8.33%	4599.9	10.95%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.372e-01	1.0000	2.0	4.17%	2505.7	5.97%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-2.368e-01	1.0000	14.0	29.17%	14130.4	33.65%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.328e-01	1.0000	6.0	12.50%	6646.0	15.83%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.317e-01	1.0000	1.0	2.08%	1356.4	3.23%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-2.315e-01	1.0000	15.0	31.25%	15079.3	35.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.291e-01	1.0000	7.0	14.58%	7644.8	18.21%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.251e-01	1.0000	2.0	4.17%	2557.8	6.09%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.250e-01	1.0000	1.0	2.08%	1378.8	3.28%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.225e-01	1.0000	4.0	8.33%	4703.7	11.20%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.213e-01	1.0000	7.0	14.58%	7697.7	18.33%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.201e-01	1.0000	8.0	16.67%	8671.0	20.65%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.176e-01	1.0000	6.0	12.50%	6744.9	16.06%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.093e-01	1.0000	1.0	2.08%	1433.3	3.41%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.090e-01	1.0000	20.0	41.67%	19734.0	47.00%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.088e-01	1.0000	31.0	64.58%	29138.3	69.39%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.087e-01	1.0000	7.0	14.58%	7787.6	18.55%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.086e-01	1.0000	2.0	4.17%	2632.5	6.27%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.060e-01	1.0000	1.0	2.08%	1445.8	3.44%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.946e-01	1.0000	15.0	31.25%	15401.2	36.68%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.814e-01	1.0000	3.0	6.25%	3892.7	9.27%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.779e-01	1.0000	17.0	35.42%	17369.4	41.36%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.778e-01	1.0000	12.0	25.00%	12804.4	30.49%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.777e-01	1.0000	5.0	10.42%	6023.9	14.35%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.741e-01	1.0000	1.0	2.08%	1574.2	3.75%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.628e-01	1.0000	4.0	8.33%	5095.1	12.13%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.567e-01	1.0000	7.0	14.58%	8215.9	19.57%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.553e-01	1.0000	3.0	6.25%	4067.9	9.69%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.548e-01	1.0000	13.0	27.08%	13970.7	33.27%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.509e-01	1.0000	8.0	16.67%	9257.7	22.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.508e-01	1.0000	6.0	12.50%	7267.6	17.31%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-1.494e-01	1.0000	2.0	4.17%	2961.4	7.05%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.486e-01	1.0000	3.0	6.25%	4117.2	9.80%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.479e-01	1.0000	2.0	4.17%	2971.1	7.08%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.473e-01	1.0000	3.0	6.25%	4127.5	9.83%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.449e-01	1.0000	11.0	22.92%	12207.7	29.07%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.387e-01	1.0000	3.0	6.25%	4194.7	9.99%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.383e-01	1.0000	1.0	2.08%	1753.2	4.18%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.381e-01	1.0000	4.0	8.33%	5298.2	12.62%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.296e-01	1.0000	7.0	14.58%	8490.5	20.22%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.278e-01	1.0000	1.0	2.08%	1815.3	4.32%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.276e-01	1.0000	1.0	2.08%	1817.0	4.33%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.263e-01	1.0000	1.0	2.08%	1824.3	4.34%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.236e-01	1.0000	5.0	10.42%	6501.1	15.48%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.181e-01	1.0000	4.0	8.33%	5487.5	13.07%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.173e-01	1.0000	7.0	14.58%	8631.3	20.56%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.129e-01	1.0000	13.0	27.08%	14491.2	34.51%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.121e-01	1.0000	1.0	2.08%	1918.4	4.57%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.060e-01	1.0000	1.0	2.08%	1962.2	4.67%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.034e-01	1.0000	12.0	25.00%	13692.3	32.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.008e-01	1.0000	1.0	2.08%	2002.0	4.77%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-9.344e-02	1.0000	6.0	12.50%	7915.8	18.85%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.520e-02	1.0000	2.0	4.17%	3508.4	8.36%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-8.244e-02	1.0000	4.0	8.33%	5913.6	14.08%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-8.167e-02	1.0000	8.0	16.67%	10147.8	24.17%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-7.871e-02	1.0000	14.0	29.17%	15988.2	38.08%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.381e-02	1.0000	2.0	4.17%	3646.8	8.68%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-7.234e-02	1.0000	9.0	18.75%	11317.5	26.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.179e-02	1.0000	1.0	2.08%	2272.0	5.41%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.710e-02	1.0000	1.0	2.08%	2326.3	5.54%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.477e-02	1.0000	3.0	6.25%	5022.8	11.96%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.878e-02	1.0000	1.0	2.08%	2432.2	5.79%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-4.957e-02	1.0000	3.0	6.25%	5303.2	12.63%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.214e-02	1.0000	4.0	8.33%	6673.7	15.89%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-4.195e-02	1.0000	6.0	12.50%	8923.5	21.25%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.183e-02	1.0000	7.0	14.58%	10330.8	24.60%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.762e-02	1.0000	3.0	6.25%	5900.4	14.05%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-2.665e-02	1.0000	1.0	2.08%	3066.7	7.30%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.902e-02	1.0000	2.0	4.17%	4910.5	11.69%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-1.814e-02	1.0000	8.0	16.67%	12056.8	28.71%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.745e-02	1.0000	5.0	10.42%	8798.7	20.95%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.550e-02	1.0000	1.0	2.08%	3499.4	8.33%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.860e-03	1.0000	2.0	4.17%	6110.0	14.55%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	335.7	0.80%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	0.0	0.00%	171.0	0.41%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-0.000e+00	1.0000	0.0	0.00%	484.4	1.15%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	153.3	0.36%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	0.0	0.00%	261.2	0.62%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-0.000e+00	1.0000	0.0	0.00%	1370.7	3.26%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	1727.1	4.11%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-0.000e+00	1.0000	0.0	0.00%	813.4	1.94%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	302.1	0.72%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-0.000e+00	1.0000	0.0	0.00%	117.2	0.28%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	649.3	1.55%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	38.7	0.09%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	0.0	0.00%	433.7	1.03%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	13.6	0.03%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	389.0	0.93%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	0.000e+00	1.0000	0.0	0.00%	1015.7	2.42%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	724.6	1.73%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	724.6	1.73%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	0.000e+00	1.0000	0.0	0.00%	572.1	1.36%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	0.000e+00	1.0000	0.0	0.00%	655.7	1.56%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1523.0	3.63%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	393.5	0.94%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	180.7	0.43%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	623.8	1.49%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	0.000e+00	1.0000	0.0	0.00%	1386.2	3.30%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1150.4	2.74%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1150.4	2.74%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	0.000e+00	1.0000	0.0	0.00%	1439.2	3.43%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	0.000e+00	1.0000	0.0	0.00%	733.4	1.75%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	0.000e+00	1.0000	0.0	0.00%	1177.9	2.81%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	622.8	1.48%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	0.000e+00	1.0000	0.0	0.00%	966.8	2.30%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	84.0	0.20%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	24.8	0.06%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	204.8	0.49%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	547.2	1.30%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	183.4	0.44%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	417.3	0.99%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	379.6	0.90%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	915.7	2.18%