Demo
Demo serves as an interactive showcase of BrainScope’s data analysis capabilities, providing users with example analyses and visualizations to help them better understand how to utilize the platform effectively. This page features sample datasets and analytical workflows that highlight the core functionalities of BrainScope, including single-gene and gene-set expression analysis, cell-type marker exploration, and comparative transcriptomic studies across species, brain regions, and conditions. Users can navigate through different sections such as DataInfo & Gene: Explore dataset metadata, gene expression patterns, and cell marker expression at the single-gene level using Cytopedia; ShinyAtlas: Visualize interactive single-cell and spatial transcriptomic atlases; HomoGene: Compare homologous gene expression across different species; GeneSets & TF: Perform gene set and transcription factor enrichment analysis; Stats & Anno: Access statistical summaries and dataset annotations; TimeScale Review: Investigate evolutionary and developmental gene expression trends; Enrichment & Download: Conduct functional enrichment analysis and download processed results. By presenting step-by-step analytical demonstrations, the Demo page provides an intuitive entry point for new users while serving as a reference for advanced researchers looking to leverage BrainScope’s full analytical power.
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DataInfo&Gene
ShinyAtlas
HomoGene
GeneSets&TF
Stats&Anno
TimeScaleReview
Enrichment
Download
Part 1: DataInfo&Gene, Expression atlas at gene level
  • Information
  • GeneSet Exp
Explore data at the single-gene level (2000 cells sampled)
Features
Explore data at the gene set level
    • Select
    • Type
    • BriefIntro
    • GeneNum
    • GeneList
    Gene set expression



    Part 2: ShinyAtlas, Using ShinyCell to explore the dataset
    • ShinyCell
    Explore data at the single-gene level
    Part 3: HomoGene, Files of the homologous gene conversion process
    • Homologous Gene
    • Faa
    • Gtf
    Table
    Show
    entries
    Search:
      Part 4: GeneSets&TF, Association network infered from transcriptome
      • Explore data at the gene set level
        • Select
        • Type
        • BriefIntro
        • GeneNum
        • GeneList
        • Association
        Putative positive regulators of
        Show
        entries
        Search:
        • Symbol
        • Correlation
        • P value
        • Adjusted P value
        Putative negative regulators of
        Show
        entries
        Search:
        • Symbol
        • Correlation
        • P value
        • Adjusted P value
        Part 5: Stats&Anno, Sample-wise statistics & annotation
        • Statistics
        • Celltype Annotation
        • Celltype&Clustering DEG
        The DEG of CellType
        Show
        entries
        Search:
          The DEG of leiden cluster
          Show
          entries
          Search:
            Part 6: TimeScaleReview, Timescale unbiased review of celltype and lineage expression
            • Cross species expression
            Part 7: Enrichment, Enrichment of gene list
            • Eel, Easy Enrichment of gene List (ToppGene)
            • Gene list
            • ToppGene enrichment
            • PPI
            • Motif enrichment

            Celltype: cell type; Symbol: gene symbol; p_val: p value; avg_log2FC: average logfc between two groups; p_val_adj: adjusted p-value;

              Toppgen enrichment analysis of genelist
              Download
                • Category
                • ID
                • Name
                • PValue
                • QValueFDRBH
                • QValueFDRBY
                • Detail

                Part 8: Download, Resource according to atlas ontology
                • Raccoon
                DataInfo&Gene
                ShinyAtlas
                HomoGene
                GeneSets&TF
                Stats&Anno
                TimeScaleReview
                Enrichment
                Download