Information for 3-TAGT (Motif 9)

A C G T C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T C G T A
p-value:1e0
log p-value:-5.368e-01
Information Content per bp:1.530
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif85.11%
Number of Background Sequences with motif37746.2
Percentage of Background Sequences with motif84.92%
Average Position of motif in Targets476.5 +/- 288.9bp
Average Position of motif in Background492.3 +/- 338.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)3.90
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TAGT----
ACTAGTTAAC
 A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------TAGT-------
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TAGT--------
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

ZKSCAN1/MA1585.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TAGT-----
ATAGTAGGTG
 A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TAGT---
CCATTGTTNY
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

BARX1/MA0875.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TAGT---
NTAATTGN
 A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TAGT--
GKTAATGR
 A C G T A C G T A C G T C G T A A C T G A C G T A C G T A C G T
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

NR1I3/MA1534.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGT----
AAAGTTCAT
 A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T

PDX1/MA0132.2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGT---
CTAATTAN
 A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A G T C A C G T C G T A C G T A A C G T A C G T C T G A A T G C

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TAGT---
NTAATTGG
 A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G