Information for 3-CTCTTTAAAA (Motif 3)

G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A
Reverse Opposite:
G C A T A C G T A C G T A G C T C T G A C G T A C G T A T C A G C G T A C A T G
p-value:1e-6
log p-value:-1.515e+01
Information Content per bp:1.830
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif44.68%
Number of Background Sequences with motif6105.0
Percentage of Background Sequences with motif13.73%
Average Position of motif in Targets526.8 +/- 268.6bp
Average Position of motif in Background475.7 +/- 356.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CTCTTTAAAA---
---TTTGAAACCG
 G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTCTTTAAAA
-NATTCAAAT
 G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTCTTTAAAA--
GNCTATAAAAGG
 G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTCTTTAAAA
GCTCGTAAAAA
 A C G T G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CTCTTTAAAA--
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTCTTTAAAA--
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

POU6F2/MA0793.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTCTTTAAAA
AGCTCATTAT--
 A C G T A C G T G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T

Foxf1/MA1606.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTTAAAA
NNTGTTTACAN
 A C G T G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A
G C A T G A C T C G A T T C A G G A C T C G A T C G A T G T C A A G T C G C T A G C A T

NKX6-3/MA1530.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTCTTTAAAA
CTCATTAAA-
 G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A
T A G C A G C T A G T C C G T A A C G T A G C T C T G A G C T A G C T A A C G T

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTTAAAA
NNCTCATTAT--
 A C G T A C G T G T A C C G A T A G T C A C G T A C G T A G C T T C G A G T C A G T C A C G T A
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T A C G T A C G T