Information for 2-CTGGTAAAAG (Motif 2)

T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G
Reverse Opposite:
A T G C A C G T A C G T A C G T G C A T T C G A G T A C A G T C C G T A A T C G
p-value:1e-8
log p-value:-1.964e+01
Information Content per bp:1.845
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif25.53%
Number of Background Sequences with motif1184.8
Percentage of Background Sequences with motif2.67%
Average Position of motif in Targets442.8 +/- 264.2bp
Average Position of motif in Background507.4 +/- 336.4bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CTGGTAAAAG
GCTCGTAAAAA
 A C G T T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CTGGTAAAAG--
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTGGTAAAAG
CYWSTGGTCARA-
 A C G T A C G T A C G T T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTGGTAAAAG--
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGGTAAAAG
GGTCGTAAAAA
 A C G T T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGGTAAAAG
GTCGTAAAAA
 T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGGTAAAAG-
GGTCGTAAAATT
 A C G T T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGGTAAAAG
GGTCGTAAAAT
 A C G T T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGGTAAAAG
AGTCGTAAAAA
 A C G T T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC9/MA0485.2/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGGTAAAAG
GTCGTAAAAT
 T A G C C G A T A C T G A C T G A G C T C G T A C G T A C G T A C G T A A T C G
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T