Information for 1-GCCCTTTGGA (Motif 1)

A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A
Reverse Opposite:
C G A T G T A C A T G C C T G A G C T A C T G A A C T G A C T G C T A G T A G C
p-value:1e-8
log p-value:-1.999e+01
Information Content per bp:1.832
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif19.15%
Number of Background Sequences with motif481.6
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets454.1 +/- 271.3bp
Average Position of motif in Background522.7 +/- 265.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTTTGGA---
NTGACCTTTGGACCC
 A C G T A C G T A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A A C G T A C G T A C G T
C A T G G A C T T C A G T G C A G T A C G T A C A G C T G C A T A G C T C T A G C T A G G T C A G T A C A G T C A G T C

EBF3/MA1637.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTTTGGA-
NNTCCCTTGGGAN
 A C G T A C G T A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A A C G T
C G T A A C G T A G C T A G T C G A T C A G T C G A C T C A G T C T A G C T A G A T C G T C G A T G C A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTTTGGA
CTGACCTTTG--
 A C G T A C G T A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T

Ebf2/MA1604.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTTTGGA-
NNTCCCTTGGGAN
 A C G T A C G T A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A A C G T
C T G A A C T G A G C T G A T C G A T C A G T C G A C T C A G T C T A G C T A G A T C G T C G A T G C A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCCCTTTGGA--
--CCTTTGAWGT
 A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCCCTTTGGA--
--CCTTTGATGT
 A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTTTGGA--
NTGCCCTTGGGCGN
 A C G T A C G T A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A A C G T A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCCTTTGGA--
--CCTTTGATST
 A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A A C G T A C G T
A C G T A C G T A T G C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTTTGGA-----
TGGACTTTGNNCTNTG
 A C G T A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

NR4A1/MA1112.2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTTTGGA
NNTGACCTTTNN-
 A C G T A C G T A C G T A T C G A G T C A G T C A G T C A G C T C G A T A G C T A T C G C A T G C G T A
G A C T A G C T G A C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T C G T A G T C A A C G T