Information for 4-GNTTGCCTTR (Motif 4)

C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A
Reverse Opposite:
G A C T G T C A G C T A C T A G A C T G A G T C G T C A C G T A C A G T G T A C
p-value:1e-4
log p-value:-1.016e+01
Information Content per bp:1.707
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif35.90%
Number of Background Sequences with motif4699.0
Percentage of Background Sequences with motif10.98%
Average Position of motif in Targets484.1 +/- 292.5bp
Average Position of motif in Background516.8 +/- 306.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GNTTGCCTTR
NNACTTGCCTT-
 A C G T A C G T C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GNTTGCCTTR
BNTGDCCTTG
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GNTTGCCTTR-----
GCTGACCTTGAACTN
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A A C G T A C G T A C G T A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

NR5A1/MA1540.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GNTTGCCTTR--
-NTGACCTTGAN
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A A C G T A C G T
A C G T C T A G G A C T T C A G C T G A A G T C G T A C G C A T G A C T T A C G C T G A T G A C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GNTTGCCTTR--
--TGACCTTGAN
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A A C G T A C G T
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GNTTGCCTTR--
--TGACCTTGAV
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A A C G T A C G T
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GNTTGCCTTR
--TGACCTYA
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GNTTGCCTTR
-GTGACCTT-
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GNTTGCCTTR-
--TTGACTTTT
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A A C G T
A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GNTTGCCTTR---
-GTGACCTTGRVN
 C A T G G T C A C G A T A C G T C T A G G T A C A G T C C G A T C A G T C T G A A C G T A C G T A C G T
A C G T C A T G G A C T T A C G G T C A G T A C G A T C G A C T A G C T A T C G T C G A T A C G T A G C