Information for 1-CGGAACAAAT (Motif 1)

A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T
Reverse Opposite:
C T G A A C G T A C G T A C G T A C T G A C G T G C A T A G T C G T A C A C T G
p-value:1e-7
log p-value:-1.840e+01
Information Content per bp:1.883
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif17.95%
Number of Background Sequences with motif295.3
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets618.1 +/- 418.2bp
Average Position of motif in Background602.7 +/- 283.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CGGAACAAAT-
-GGAACAAAGR
 A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T A C G T
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CGGAACAAAT-
-RNAACAATGG
 A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

SOX4/MA0867.2/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CGGAACAAAT--
--GAACAAAGGG
 A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T A C G T A C G T
A C G T A C G T C T A G T C G A C G T A A T G C T C G A T C G A G C T A C T A G T C A G T C A G

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CGGAACAAAT----
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CGGAACAAAT-
-AAAACAAAGG
 A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CGGAACAAAT
---AACAAT-
 A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

SOX12/MA1561.1/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGGAACAAAT
ACCGAACAATG
 A C G T A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T
G T C A G T A C G A T C C A T G T G C A T C G A A G T C C G T A T G C A G A C T T A C G

SOX10/MA0442.2/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGGAACAAAT--
-AAAACAAAGAA
 A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T A C G T A C G T
A C G T C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGGAACAAAT-----
AGAAGAACAAAGGACTA
 A C G T A C G T A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGGAACAAAT-----
ATAAGAACAAAGGACTA
 A C G T A C G T A G T C C A T G A C T G C G T A C G T A A G T C C G T A C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A