Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 50)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45013)	% of Background Sequences with Motif
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-6.784e+00	0.4978	36.0	72.00%	22367.2	49.69%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-2	-5.998e+00	0.5466	11.0	22.00%	3772.9	8.38%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-2	-5.317e+00	0.7201	12.0	24.00%	4738.0	10.52%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.244e+00	0.7201	6.0	12.00%	1448.9	3.22%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-4.965e+00	0.7201	26.0	52.00%	15359.3	34.12%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-4.719e+00	0.7201	6.0	12.00%	1619.1	3.60%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-4.581e+00	0.7201	17.0	34.00%	8689.5	19.30%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.577e+00	0.7201	21.0	42.00%	11725.4	26.05%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-4.403e+00	0.7201	25.0	50.00%	15138.2	33.63%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-4.362e+00	0.7201	10.0	20.00%	4060.4	9.02%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-4.027e+00	0.7201	15.0	30.00%	7721.9	17.15%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.888e+00	0.7514	6.0	12.00%	1947.9	4.33%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-3.806e+00	0.7523	3.0	6.00%	538.7	1.20%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-3.758e+00	0.7523	33.0	66.00%	22966.8	51.02%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.696e+00	0.7523	9.0	18.00%	3853.0	8.56%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-3.546e+00	0.7931	6.0	12.00%	2108.1	4.68%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.466e+00	0.8087	9.0	18.00%	4013.9	8.92%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-3.445e+00	0.8087	31.0	62.00%	21570.1	47.91%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.352e+00	0.8109	16.0	32.00%	9138.4	20.30%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.162e+00	0.9319	30.0	60.00%	21079.4	46.82%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-3.161e+00	0.9319	17.0	34.00%	10130.9	22.50%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.102e+00	0.9319	30.0	60.00%	21168.8	47.02%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-3.097e+00	0.9319	31.0	62.00%	22079.7	49.05%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.018e+00	0.9319	10.0	20.00%	5052.2	11.22%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-3.011e+00	0.9319	15.0	30.00%	8753.7	19.44%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.995e+00	0.9319	8.0	16.00%	3698.6	8.22%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.992e+00	0.9319	18.0	36.00%	11130.2	24.72%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-1	-2.991e+00	0.9319	3.0	6.00%	745.1	1.66%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1	-2.865e+00	0.9319	20.0	40.00%	12921.7	28.70%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-2.856e+00	0.9319	6.0	12.00%	2496.6	5.55%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.847e+00	0.9319	2.0	4.00%	349.8	0.78%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.828e+00	0.9319	16.0	32.00%	9752.0	21.66%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.680e+00	0.9319	25.0	50.00%	17415.3	38.69%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.676e+00	0.9319	6.0	12.00%	2615.5	5.81%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.653e+00	0.9319	17.0	34.00%	10775.5	23.94%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.646e+00	0.9319	15.0	30.00%	9195.1	20.43%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.622e+00	0.9319	6.0	12.00%	2652.9	5.89%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.602e+00	0.9319	2.0	4.00%	402.3	0.89%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-1	-2.568e+00	0.9319	17.0	34.00%	10891.2	24.19%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.558e+00	0.9319	9.0	18.00%	4766.8	10.59%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.474e+00	0.9319	3.0	6.00%	927.1	2.06%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.448e+00	0.9319	12.0	24.00%	7114.6	15.80%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.383e+00	0.9444	3.0	6.00%	965.3	2.14%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.375e+00	0.9444	38.0	76.00%	29823.0	66.25%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-2.305e+00	0.9758	12.0	24.00%	7290.7	16.20%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.293e+00	0.9758	28.0	56.00%	20704.9	45.99%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.289e+00	0.9758	5.0	10.00%	2235.0	4.96%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.215e+00	1.0000	8.0	16.00%	4382.9	9.74%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-2.209e+00	1.0000	17.0	34.00%	11421.9	25.37%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.193e+00	1.0000	6.0	12.00%	2981.6	6.62%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.090e+00	1.0000	23.0	46.00%	16687.2	37.07%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.082e+00	1.0000	12.0	24.00%	7583.4	16.85%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.052e+00	1.0000	11.0	22.00%	6840.5	15.20%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.030e+00	1.0000	11.0	22.00%	6870.6	15.26%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-2.020e+00	1.0000	22.0	44.00%	15954.6	35.44%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.015e+00	1.0000	8.0	16.00%	4595.1	10.21%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.955e+00	1.0000	23.0	46.00%	16940.2	37.63%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.950e+00	1.0000	1.0	2.00%	137.3	0.30%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.941e+00	1.0000	8.0	16.00%	4679.8	10.40%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.939e+00	1.0000	25.0	50.00%	18718.9	41.58%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.934e+00	1.0000	23.0	46.00%	16981.2	37.72%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.924e+00	1.0000	25.0	50.00%	18747.6	41.64%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.880e+00	1.0000	18.0	36.00%	12808.3	28.45%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.813e+00	1.0000	13.0	26.00%	8784.8	19.51%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.811e+00	1.0000	41.0	82.00%	33758.4	74.99%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.799e+00	1.0000	5.0	10.00%	2624.3	5.83%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.786e+00	1.0000	13.0	26.00%	8827.4	19.61%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.786e+00	1.0000	1.0	2.00%	164.4	0.37%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.759e+00	1.0000	7.0	14.00%	4136.6	9.19%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.748e+00	1.0000	1.0	2.00%	171.4	0.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.739e+00	1.0000	22.0	44.00%	16502.4	36.66%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.737e+00	1.0000	22.0	44.00%	16506.9	36.67%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.710e+00	1.0000	29.0	58.00%	22754.4	50.55%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-1.684e+00	1.0000	27.0	54.00%	21017.7	46.69%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.684e+00	1.0000	10.0	20.00%	6570.8	14.60%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.674e+00	1.0000	7.0	14.00%	4237.4	9.41%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.674e+00	1.0000	6.0	12.00%	3481.6	7.73%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.666e+00	1.0000	9.0	18.00%	5803.6	12.89%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.665e+00	1.0000	19.0	38.00%	14067.2	31.25%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.644e+00	1.0000	8.0	16.00%	5048.1	11.21%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.637e+00	1.0000	23.0	46.00%	17588.2	39.07%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.634e+00	1.0000	9.0	18.00%	5848.9	12.99%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.630e+00	1.0000	1.0	2.00%	195.3	0.43%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.618e+00	1.0000	15.0	30.00%	10774.2	23.93%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.608e+00	1.0000	24.0	48.00%	18530.1	41.16%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.607e+00	1.0000	8.0	16.00%	5098.4	11.33%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.594e+00	1.0000	4.0	8.00%	2095.5	4.65%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.591e+00	1.0000	27.0	54.00%	21226.1	47.15%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.587e+00	1.0000	20.0	40.00%	15090.1	33.52%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.570e+00	1.0000	6.0	12.00%	3600.7	8.00%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.553e+00	1.0000	16.0	32.00%	11741.5	26.08%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.551e+00	1.0000	4.0	8.00%	2134.7	4.74%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.539e+00	1.0000	5.0	10.00%	2880.1	6.40%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.519e+00	1.0000	2.0	4.00%	789.1	1.75%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.517e+00	1.0000	9.0	18.00%	6022.9	13.38%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.495e+00	1.0000	7.0	14.00%	4468.0	9.92%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.494e+00	1.0000	28.0	56.00%	22347.3	49.64%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.481e+00	1.0000	12.0	24.00%	8531.8	18.95%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.474e+00	1.0000	18.0	36.00%	13611.1	30.24%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.471e+00	1.0000	6.0	12.00%	3719.4	8.26%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.465e+00	1.0000	4.0	8.00%	2214.6	4.92%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.465e+00	1.0000	15.0	30.00%	11073.9	24.60%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.449e+00	1.0000	7.0	14.00%	4530.2	10.06%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.437e+00	1.0000	6.0	12.00%	3763.2	8.36%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.429e+00	1.0000	3.0	6.00%	1523.1	3.38%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.423e+00	1.0000	28.0	56.00%	22518.6	50.02%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.419e+00	1.0000	18.0	36.00%	13731.4	30.50%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.418e+00	1.0000	17.0	34.00%	12876.5	28.60%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.410e+00	1.0000	12.0	24.00%	8663.7	19.24%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.387e+00	1.0000	9.0	18.00%	6230.7	13.84%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.386e+00	1.0000	20.0	40.00%	15538.9	34.52%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.373e+00	1.0000	4.0	8.00%	2306.3	5.12%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.365e+00	1.0000	29.0	58.00%	23560.2	52.34%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.363e+00	1.0000	11.0	22.00%	7920.5	17.59%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.357e+00	1.0000	29.0	58.00%	23581.6	52.38%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.340e+00	1.0000	9.0	18.00%	6310.5	14.02%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.337e+00	1.0000	20.0	40.00%	15655.2	34.78%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.317e+00	1.0000	3.0	6.00%	1618.2	3.59%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.317e+00	1.0000	10.0	20.00%	7176.2	15.94%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.309e+00	1.0000	18.0	36.00%	13984.4	31.06%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.308e+00	1.0000	3.0	6.00%	1626.2	3.61%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.302e+00	1.0000	23.0	46.00%	18373.4	40.81%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.291e+00	1.0000	20.0	40.00%	15767.6	35.03%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.274e+00	1.0000	15.0	30.00%	11482.4	25.51%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.274e+00	1.0000	14.0	28.00%	10628.5	23.61%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.270e+00	1.0000	24.0	48.00%	19339.2	42.96%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.256e+00	1.0000	9.0	18.00%	6458.3	14.35%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.253e+00	1.0000	22.0	44.00%	17618.1	39.14%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.250e+00	1.0000	7.0	14.00%	4826.2	10.72%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.243e+00	1.0000	2.0	4.00%	958.2	2.13%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.241e+00	1.0000	19.0	38.00%	15020.5	33.37%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.234e+00	1.0000	12.0	24.00%	9015.2	20.03%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.226e+00	1.0000	5.0	10.00%	3253.6	7.23%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.219e+00	1.0000	32.0	64.00%	26656.3	59.21%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.197e+00	1.0000	1.0	2.00%	322.4	0.72%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.177e+00	1.0000	18.0	36.00%	14309.9	31.79%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.177e+00	1.0000	14.0	28.00%	10848.9	24.10%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.167e+00	1.0000	25.0	50.00%	20505.0	45.55%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.164e+00	1.0000	14.0	28.00%	10878.4	24.16%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.162e+00	1.0000	23.0	46.00%	18744.0	41.64%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.159e+00	1.0000	34.0	68.00%	28640.1	63.62%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.147e+00	1.0000	30.0	60.00%	25044.7	55.63%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.139e+00	1.0000	13.0	26.00%	10079.6	22.39%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.121e+00	1.0000	4.0	8.00%	2595.9	5.77%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.114e+00	1.0000	3.0	6.00%	1816.5	4.04%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.110e+00	1.0000	5.0	10.00%	3416.2	7.59%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.109e+00	1.0000	8.0	16.00%	5898.0	13.10%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.109e+00	1.0000	6.0	12.00%	4237.0	9.41%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.104e+00	1.0000	2.0	4.00%	1063.2	2.36%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.097e+00	1.0000	39.0	78.00%	33405.5	74.21%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.088e+00	1.0000	29.0	58.00%	24312.8	54.01%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.085e+00	1.0000	3.0	6.00%	1847.4	4.10%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.084e+00	1.0000	9.0	18.00%	6789.8	15.08%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.069e+00	1.0000	8.0	16.00%	5975.7	13.27%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.039e+00	1.0000	11.0	22.00%	8595.2	19.09%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.036e+00	1.0000	21.0	42.00%	17333.0	38.50%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.027e+00	1.0000	22.0	44.00%	18244.2	40.53%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.025e+00	1.0000	10.0	20.00%	7769.2	17.26%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.024e+00	1.0000	32.0	64.00%	27208.1	60.44%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.014e+00	1.0000	11.0	22.00%	8653.2	19.22%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-9.993e-01	1.0000	3.0	6.00%	1946.3	4.32%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.773e-01	1.0000	2.0	4.00%	1174.6	2.61%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-9.647e-01	1.0000	18.0	36.00%	14894.2	33.09%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-9.583e-01	1.0000	34.0	68.00%	29218.2	64.90%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-9.534e-01	1.0000	10.0	20.00%	7936.8	17.63%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-9.524e-01	1.0000	3.0	6.00%	2004.8	4.45%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.492e-01	1.0000	3.0	6.00%	2008.1	4.46%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-9.485e-01	1.0000	3.0	6.00%	2009.4	4.46%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-9.472e-01	1.0000	10.0	20.00%	7951.3	17.66%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-9.424e-01	1.0000	8.0	16.00%	6238.4	13.86%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-9.226e-01	1.0000	13.0	26.00%	10625.6	23.60%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-9.207e-01	1.0000	11.0	22.00%	8885.7	19.74%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.071e-01	1.0000	4.0	8.00%	2899.3	6.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-9.054e-01	1.0000	2.0	4.00%	1246.0	2.77%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.026e-01	1.0000	10.0	20.00%	8061.9	17.91%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.824e-01	1.0000	8.0	16.00%	6373.6	14.16%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-8.770e-01	1.0000	1.0	2.00%	481.7	1.07%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-8.708e-01	1.0000	31.0	62.00%	26789.1	59.51%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-8.705e-01	1.0000	4.0	8.00%	2958.5	6.57%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.618e-01	1.0000	11.0	22.00%	9042.0	20.09%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-8.533e-01	1.0000	35.0	70.00%	30453.2	67.65%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-8.410e-01	1.0000	5.0	10.00%	3867.5	8.59%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-8.276e-01	1.0000	6.0	12.00%	4760.1	10.57%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-8.251e-01	1.0000	3.0	6.00%	2178.9	4.84%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.197e-01	1.0000	8.0	16.00%	6523.5	14.49%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-8.104e-01	1.0000	6.0	12.00%	4797.7	10.66%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-7.973e-01	1.0000	13.0	26.00%	10990.3	24.41%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-7.911e-01	1.0000	13.0	26.00%	11009.1	24.46%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-7.790e-01	1.0000	10.0	20.00%	8391.1	18.64%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-7.681e-01	1.0000	2.0	4.00%	1401.4	3.11%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-7.484e-01	1.0000	8.0	16.00%	6706.4	14.90%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.474e-01	1.0000	4.0	8.00%	3176.1	7.06%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-7.466e-01	1.0000	1.0	2.00%	574.2	1.28%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-7.437e-01	1.0000	25.0	50.00%	21865.4	48.57%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-7.434e-01	1.0000	22.0	44.00%	19185.2	42.62%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.402e-01	1.0000	8.0	16.00%	6728.8	14.95%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.285e-01	1.0000	14.0	28.00%	12101.7	26.88%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.187e-01	1.0000	10.0	20.00%	8568.9	19.03%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-7.153e-01	1.0000	9.0	18.00%	7687.7	17.08%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.151e-01	1.0000	1.0	2.00%	600.7	1.33%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.142e-01	1.0000	8.0	16.00%	6799.9	15.10%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.140e-01	1.0000	1.0	2.00%	601.4	1.34%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-7.037e-01	1.0000	7.0	14.00%	5936.2	13.19%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.953e-01	1.0000	6.0	12.00%	5065.0	11.25%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-6.894e-01	1.0000	30.0	60.00%	26547.3	58.97%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.818e-01	1.0000	3.0	6.00%	2411.1	5.36%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-6.772e-01	1.0000	12.0	24.00%	10489.7	23.30%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.758e-01	1.0000	32.0	64.00%	28388.2	63.06%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.673e-01	1.0000	41.0	82.00%	36451.5	80.97%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.533e-01	1.0000	1.0	2.00%	656.5	1.46%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.410e-01	1.0000	21.0	42.00%	18693.4	41.52%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.390e-01	1.0000	8.0	16.00%	7018.5	15.59%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.300e-01	1.0000	1.0	2.00%	679.8	1.51%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.260e-01	1.0000	5.0	10.00%	4338.4	9.64%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.221e-01	1.0000	8.0	16.00%	7070.1	15.71%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.196e-01	1.0000	2.0	4.00%	1610.8	3.58%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.166e-01	1.0000	3.0	6.00%	2534.9	5.63%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.090e-01	1.0000	2.0	4.00%	1628.0	3.62%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.067e-01	1.0000	3.0	6.00%	2554.6	5.67%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-6.031e-01	1.0000	39.0	78.00%	34895.5	77.52%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.991e-01	1.0000	8.0	16.00%	7143.7	15.87%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.981e-01	1.0000	24.0	48.00%	21563.5	47.90%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.970e-01	1.0000	8.0	16.00%	7150.1	15.88%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.913e-01	1.0000	7.0	14.00%	6257.5	13.90%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-5.885e-01	1.0000	21.0	42.00%	18917.3	42.02%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-5.799e-01	1.0000	18.0	36.00%	16259.3	36.12%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.755e-01	1.0000	38.0	76.00%	34116.0	75.78%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.674e-01	1.0000	3.0	6.00%	2636.5	5.86%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-5.655e-01	1.0000	1.0	2.00%	749.8	1.67%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.627e-01	1.0000	12.0	24.00%	10909.8	24.23%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-5.604e-01	1.0000	11.0	22.00%	10009.4	22.23%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-5.581e-01	1.0000	19.0	38.00%	17256.0	38.33%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.554e-01	1.0000	10.0	20.00%	9117.7	20.25%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.477e-01	1.0000	10.0	20.00%	9146.4	20.32%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-5.452e-01	1.0000	8.0	16.00%	7324.6	16.27%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.438e-01	1.0000	3.0	6.00%	2688.7	5.97%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.332e-01	1.0000	2.0	4.00%	1759.1	3.91%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.233e-01	1.0000	17.0	34.00%	15610.7	34.68%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.206e-01	1.0000	37.0	74.00%	33456.5	74.32%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-5.094e-01	1.0000	19.0	38.00%	17482.4	38.83%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-5.087e-01	1.0000	8.0	16.00%	7455.3	16.56%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.071e-01	1.0000	2.0	4.00%	1809.1	4.02%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.041e-01	1.0000	2.0	4.00%	1815.1	4.03%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.841e-01	1.0000	5.0	10.00%	4739.5	10.53%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.803e-01	1.0000	1.0	2.00%	859.5	1.91%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.800e-01	1.0000	12.0	24.00%	11257.5	25.01%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.797e-01	1.0000	7.0	14.00%	6633.3	14.73%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-4.743e-01	1.0000	14.0	28.00%	13114.9	29.13%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.718e-01	1.0000	23.0	46.00%	21270.4	47.25%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.675e-01	1.0000	6.0	12.00%	5739.7	12.75%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.448e-01	1.0000	10.0	20.00%	9571.0	21.26%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-4.424e-01	1.0000	6.0	12.00%	5830.1	12.95%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.396e-01	1.0000	5.0	10.00%	4887.6	10.86%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.356e-01	1.0000	2.0	4.00%	1962.5	4.36%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-4.308e-01	1.0000	7.0	14.00%	6822.5	15.16%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-4.269e-01	1.0000	10.0	20.00%	9652.3	21.44%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.262e-01	1.0000	4.0	8.00%	3967.9	8.81%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-4.220e-01	1.0000	12.0	24.00%	11531.9	25.62%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.215e-01	1.0000	23.0	46.00%	21543.9	47.86%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-4.169e-01	1.0000	9.0	18.00%	8764.5	19.47%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-4.166e-01	1.0000	2.0	4.00%	2007.3	4.46%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.072e-01	1.0000	22.0	44.00%	20726.5	46.04%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.044e-01	1.0000	5.0	10.00%	5014.1	11.14%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-4.001e-01	1.0000	38.0	76.00%	34868.5	77.46%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-3.926e-01	1.0000	14.0	28.00%	13531.8	30.06%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.910e-01	1.0000	8.0	16.00%	7941.3	17.64%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.906e-01	1.0000	19.0	38.00%	18113.9	40.24%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.885e-01	1.0000	3.0	6.00%	3099.6	6.89%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.842e-01	1.0000	2.0	4.00%	2089.5	4.64%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-3.756e-01	1.0000	12.0	24.00%	11773.0	26.15%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.752e-01	1.0000	5.0	10.00%	5127.2	11.39%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-3.719e-01	1.0000	2.0	4.00%	2122.3	4.71%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.656e-01	1.0000	16.0	32.00%	15525.4	34.49%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.653e-01	1.0000	11.0	22.00%	10896.8	24.21%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.585e-01	1.0000	4.0	8.00%	4205.9	9.34%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.555e-01	1.0000	23.0	46.00%	21939.9	48.74%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.483e-01	1.0000	21.0	42.00%	20185.2	44.84%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.322e-01	1.0000	31.0	62.00%	29180.4	64.82%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-3.299e-01	1.0000	6.0	12.00%	6305.7	14.01%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.240e-01	1.0000	3.0	6.00%	3319.8	7.37%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.229e-01	1.0000	1.0	2.00%	1144.6	2.54%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.203e-01	1.0000	1.0	2.00%	1150.1	2.55%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-3.203e-01	1.0000	3.0	6.00%	3333.0	7.40%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.140e-01	1.0000	1.0	2.00%	1165.5	2.59%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-3.081e-01	1.0000	15.0	30.00%	14970.5	33.25%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.002e-01	1.0000	3.0	6.00%	3411.6	7.58%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.923e-01	1.0000	6.0	12.00%	6496.1	14.43%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-2.850e-01	1.0000	10.0	20.00%	10426.1	23.16%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.817e-01	1.0000	4.0	8.00%	4532.1	10.07%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.807e-01	1.0000	6.0	12.00%	6559.4	14.57%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.768e-01	1.0000	1.0	2.00%	1260.7	2.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.768e-01	1.0000	1.0	2.00%	1260.7	2.80%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.708e-01	1.0000	11.0	22.00%	11475.9	25.49%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.703e-01	1.0000	18.0	36.00%	18008.0	40.00%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.586e-01	1.0000	5.0	10.00%	5676.3	12.61%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.564e-01	1.0000	2.0	4.00%	2501.1	5.56%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.525e-01	1.0000	5.0	10.00%	5710.7	12.69%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-2.498e-01	1.0000	7.0	14.00%	7738.9	17.19%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.443e-01	1.0000	3.0	6.00%	3658.3	8.13%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.371e-01	1.0000	28.0	56.00%	27248.5	60.53%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.334e-01	1.0000	4.0	8.00%	4782.5	10.62%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.263e-01	1.0000	26.0	52.00%	25580.2	56.82%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-2.257e-01	1.0000	16.0	32.00%	16530.8	36.72%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.239e-01	1.0000	29.0	58.00%	28234.2	62.72%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.205e-01	1.0000	5.0	10.00%	5904.2	13.12%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.179e-01	1.0000	5.0	10.00%	5921.7	13.15%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.175e-01	1.0000	8.0	16.00%	8956.1	19.89%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.113e-01	1.0000	13.0	26.00%	13844.0	30.75%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.104e-01	1.0000	22.0	44.00%	22157.2	49.22%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.063e-01	1.0000	8.0	16.00%	9043.9	20.09%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.971e-01	1.0000	1.0	2.00%	1523.6	3.38%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.873e-01	1.0000	4.0	8.00%	5070.2	11.26%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.806e-01	1.0000	5.0	10.00%	6185.8	13.74%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.794e-01	1.0000	4.0	8.00%	5126.5	11.39%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.725e-01	1.0000	14.0	28.00%	15167.8	33.69%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.720e-01	1.0000	21.0	42.00%	21648.0	48.09%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-1.676e-01	1.0000	16.0	32.00%	17101.4	37.99%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.656e-01	1.0000	1.0	2.00%	1661.3	3.69%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.627e-01	1.0000	1.0	2.00%	1675.7	3.72%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.611e-01	1.0000	3.0	6.00%	4148.4	9.22%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.604e-01	1.0000	15.0	30.00%	16244.6	36.08%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.601e-01	1.0000	4.0	8.00%	5272.4	11.71%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.595e-01	1.0000	1.0	2.00%	1691.7	3.76%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.594e-01	1.0000	2.0	4.00%	2985.6	6.63%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.577e-01	1.0000	1.0	2.00%	1700.8	3.78%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.529e-01	1.0000	5.0	10.00%	6414.4	14.25%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.396e-01	1.0000	14.0	28.00%	15547.1	34.54%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.335e-01	1.0000	13.0	26.00%	14668.4	32.58%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-1.334e-01	1.0000	18.0	36.00%	19376.5	43.04%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.319e-01	1.0000	9.0	18.00%	10764.1	23.91%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.319e-01	1.0000	1.0	2.00%	1844.2	4.10%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.306e-01	1.0000	4.0	8.00%	5530.7	12.29%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.305e-01	1.0000	3.0	6.00%	4392.2	9.76%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.254e-01	1.0000	2.0	4.00%	3228.9	7.17%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.198e-01	1.0000	1.0	2.00%	1922.7	4.27%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.188e-01	1.0000	18.0	36.00%	19582.2	43.50%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.175e-01	1.0000	6.0	12.00%	7845.2	17.43%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.171e-01	1.0000	1.0	2.00%	1940.3	4.31%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.133e-01	1.0000	35.0	70.00%	34450.8	76.53%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.130e-01	1.0000	7.0	14.00%	8954.4	19.89%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.106e-01	1.0000	4.0	8.00%	5737.1	12.74%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.097e-01	1.0000	11.0	22.00%	13050.3	28.99%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.083e-01	1.0000	21.0	42.00%	22486.1	49.95%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.051e-01	1.0000	8.0	16.00%	10098.1	22.43%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.041e-01	1.0000	27.0	54.00%	27862.4	61.89%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.031e-01	1.0000	1.0	2.00%	2044.4	4.54%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.008e-01	1.0000	15.0	30.00%	17056.4	37.89%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-9.986e-02	1.0000	1.0	2.00%	2070.7	4.60%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-9.647e-02	1.0000	3.0	6.00%	4735.8	10.52%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.394e-02	1.0000	1.0	2.00%	2120.5	4.71%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-9.125e-02	1.0000	6.0	12.00%	8194.3	18.20%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-9.114e-02	1.0000	31.0	62.00%	31472.4	69.91%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-8.976e-02	1.0000	5.0	10.00%	7122.8	15.82%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.938e-02	1.0000	31.0	62.00%	31501.5	69.98%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-8.271e-02	1.0000	11.0	22.00%	13496.5	29.98%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-8.143e-02	1.0000	17.0	34.00%	19293.2	42.86%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.106e-02	1.0000	11.0	22.00%	13527.8	30.05%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.777e-02	1.0000	1.0	2.00%	2275.2	5.05%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.100e-02	1.0000	1.0	2.00%	2350.2	5.22%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.908e-02	1.0000	12.0	24.00%	14763.2	32.79%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-6.818e-02	1.0000	3.0	6.00%	5121.8	11.38%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-6.797e-02	1.0000	2.0	4.00%	3839.5	8.53%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.749e-02	1.0000	4.0	8.00%	6335.1	14.07%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-6.543e-02	1.0000	5.0	10.00%	7524.4	16.71%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-6.179e-02	1.0000	16.0	32.00%	18793.7	41.75%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.956e-02	1.0000	8.0	16.00%	10913.7	24.24%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.783e-02	1.0000	2.0	4.00%	3998.4	8.88%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-5.642e-02	1.0000	13.0	26.00%	16051.6	35.66%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.578e-02	1.0000	4.0	8.00%	6559.7	14.57%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-4.038e-02	1.0000	6.0	12.00%	9254.0	20.56%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-3.725e-02	1.0000	6.0	12.00%	9355.0	20.78%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.594e-02	1.0000	12.0	24.00%	15715.5	34.91%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-3.533e-02	1.0000	1.0	2.00%	2928.0	6.50%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.334e-02	1.0000	7.0	14.00%	10604.2	23.56%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.255e-02	1.0000	10.0	20.00%	13823.6	30.71%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-3.248e-02	1.0000	13.0	26.00%	16846.8	37.42%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.171e-02	1.0000	5.0	10.00%	8400.8	18.66%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.126e-02	1.0000	7.0	14.00%	10685.5	23.74%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.980e-02	1.0000	15.0	30.00%	18908.5	42.00%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-2.787e-02	1.0000	1.0	2.00%	3124.0	6.94%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.765e-02	1.0000	3.0	6.00%	6084.9	13.52%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-2.694e-02	1.0000	6.0	12.00%	9748.9	21.66%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.628e-02	1.0000	7.0	14.00%	10900.0	24.21%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-2.106e-02	1.0000	10.0	20.00%	14391.6	31.97%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.841e-02	1.0000	5.0	10.00%	9021.3	20.04%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.646e-02	1.0000	3.0	6.00%	6613.9	14.69%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.602e-02	1.0000	3.0	6.00%	6640.7	14.75%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.543e-02	1.0000	6.0	12.00%	10398.8	23.10%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.464e-02	1.0000	10.0	20.00%	14845.1	32.98%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.293e-02	1.0000	3.0	6.00%	6854.7	15.23%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.115e-02	1.0000	1.0	2.00%	3877.5	8.61%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.051e-02	1.0000	8.0	16.00%	13095.1	29.09%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-9.726e-03	1.0000	5.0	10.00%	9716.4	21.58%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-9.407e-03	1.0000	11.0	22.00%	16413.4	36.46%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-8.966e-03	1.0000	16.0	32.00%	21396.4	47.53%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-8.228e-03	1.0000	2.0	4.00%	5834.0	12.96%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.194e-03	1.0000	25.0	50.00%	29491.4	65.51%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.659e-03	1.0000	15.0	30.00%	20628.1	45.82%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.009e-03	1.0000	9.0	18.00%	14817.3	32.91%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-4.966e-03	1.0000	11.0	22.00%	17142.7	38.08%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.523e-03	1.0000	18.0	36.00%	25143.6	55.85%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-9.420e-04	1.0000	6.0	12.00%	13264.3	29.46%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-4.340e-04	1.0000	14.0	28.00%	22582.7	50.16%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.940e-04	1.0000	12.0	24.00%	20694.7	45.97%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-0.000e+00	1.0000	0.0	0.00%	219.9	0.49%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-0.000e+00	1.0000	0.0	0.00%	509.8	1.13%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-0.000e+00	1.0000	0.0	0.00%	438.4	0.97%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	0.0	0.00%	1323.0	2.94%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1095.1	2.43%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-0.000e+00	1.0000	0.0	0.00%	100.6	0.22%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	0.0	0.00%	590.9	1.31%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-0.000e+00	1.0000	0.0	0.00%	590.5	1.31%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-0.000e+00	1.0000	0.0	0.00%	121.2	0.27%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	0.0	0.00%	798.9	1.77%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1183.4	2.63%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1752.0	3.89%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-0.000e+00	1.0000	0.0	0.00%	440.8	0.98%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	0.0	0.00%	783.4	1.74%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	0.0	0.00%	783.4	1.74%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-0.000e+00	1.0000	0.0	0.00%	206.2	0.46%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	556.1	1.24%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-0.000e+00	1.0000	0.0	0.00%	818.5	1.82%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-0.000e+00	1.0000	0.0	0.00%	1752.0	3.89%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-0.000e+00	1.0000	0.0	0.00%	218.7	0.49%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-0.000e+00	1.0000	0.0	0.00%	1589.1	3.53%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	0.0	0.00%	740.4	1.64%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	0.0	0.00%	263.9	0.59%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	217.5	0.48%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	3110.6	6.91%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1516.2	3.37%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-0.000e+00	1.0000	0.0	0.00%	15.3	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-0.000e+00	1.0000	0.0	0.00%	178.9	0.40%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-0.000e+00	1.0000	0.0	0.00%	2043.3	4.54%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-0.000e+00	1.0000	0.0	0.00%	507.7	1.13%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-0.000e+00	1.0000	0.0	0.00%	37.9	0.08%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	1512.4	3.36%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	0.0	0.00%	635.4	1.41%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	357.5	0.79%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1497.3	3.33%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	0.0	0.00%	24.4	0.05%