Information for 6-CCCATCGTTT (Motif 6)

A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C T G
p-value:1e-3
log p-value:-8.033e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets314.0 +/- 0.0bp
Average Position of motif in Background523.3 +/- 113.2bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0044.1_Homez/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCCATCGTTT-----
AAAACATCGTTTTTAAG
 A C G T A C G T A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CCCATCGTTT-
-CCATTGTTYB
 A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCCATCGTTT
-CCATTGTTC
 A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCCATCGTTT---
-CCATTGTTYYBB
 A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C G A T C C G T A A C G T A C G T A C T G A C G T A G C T A G C T A G T C A T C G A C T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCCATCGTTT
NCCATTGTTC
 A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

SOX13/MA1120.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCCATCGTTT
NNCCATTGTNN
 A C G T A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

SOX2/MA0143.4/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCATCGTTT
NNCCATTGTNN
 A C G T A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T
C G A T G C A T G A T C G A T C G C T A A G C T C G A T C T A G C G A T G C A T G C A T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCCATCGTTT
NCCATTGTTY
 A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCCATCGTTT-
-CCATTGTTTT
 A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCCATCGTTT---
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T