Information for 3-GCGCATTGAG (Motif 3)

A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C G T A C G T A A C G T A C T G A G T C A C T G A G T C
p-value:1e-3
log p-value:-8.438e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets871.0 +/- 0.0bp
Average Position of motif in Background445.2 +/- 773.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX18/MA1563.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCGCATTGAG
--GCATTGTN
 A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G
A C G T A C G T A T C G A G T C C T G A A C G T A G C T A C T G G A C T A T C G

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCGCATTGAG-
GCCGCGCAGTGCGT
 A C G T A C G T A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCGCATTGAG-
---TATTGAYY
 A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

NR1H4/MA1110.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCGCATTGAG
NAGGTCATTGA-
 A C G T A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCGCATTGAG----
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCGCATTGAG----
----ATTGATTYND
 A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCATTGAG
NTCGCGCGCCTTNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

NKX2-5/MA0063.2/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCGCATTGAG----
---NNTTGAGTGNN
 A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCGCATTGAG
-CTCATTGTC
 A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

SOX13/MA1120.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCGCATTGAG-
NNCCATTGTNN
 A C T G A G T C A C T G A G T C C G T A A C G T A C G T A C T G C G T A A C T G A C G T
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T