Information for 6-TGCTAATAGG (Motif 6)

A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
Reverse Opposite:
G T A C T A G C G A C T T C G A A G C T C G A T C G T A T A C G A G T C C G T A
p-value:1e-6
log p-value:-1.544e+01
Information Content per bp:1.700
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif22.00%
Number of Background Sequences with motif1319.9
Percentage of Background Sequences with motif2.95%
Average Position of motif in Targets363.1 +/- 246.2bp
Average Position of motif in Background491.3 +/- 337.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F4/MA0789.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATAGG
TATGCAAAT---
 A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATAGG
WATGCAAATGAG
 A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATAGG
TATGCWAATBAV
 A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATAGG
TATGCAAAT---
 A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATAGG
TTATGCAAAT---
 A C G T A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TGCTAATAGG-
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TGCTAATAGG-
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGCTAATAGG
AATATGCAAATT--
 A C G T A C G T A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGCTAATAGG
ATATGCAAATT--
 A C G T A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGCTAATAGG
ATATGCAAAT---
 A C G T A C G T A C G T A C G T T C A G A T G C G C A T G C T A T C G A A G C T C T G A A T C G C A T G
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T