Information for 3-AWATAYTACA (Motif 3)

C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A
Reverse Opposite:
A C G T T C A G A G C T G C T A T C A G G A C T G C T A G A C T C G T A G C A T
p-value:1e-9
log p-value:-2.229e+01
Information Content per bp:1.452
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif24.00%
Number of Background Sequences with motif876.0
Percentage of Background Sequences with motif1.96%
Average Position of motif in Targets499.2 +/- 269.5bp
Average Position of motif in Background466.2 +/- 326.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRTC2/MA1479.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AWATAYTACA--
AATTGATACATT
 C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A A C G T A C G T
G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AWATAYTACA
AATTATT---
 C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A
G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AWATAYTACA
NNTNNCAATATTAG-
 A C G T A C G T A C G T A C G T A C G T C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AWATAYTACA
NNTNNCAATATTAG-
 A C G T A C G T A C G T A C G T A C G T C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

DMRTA2/MA1478.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AWATAYTACA--
AATTGTTACATT
 C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A A C G T A C G T
G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T

PH0062.1_Hoxb7/Jaspar

Match Rank:6
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------AWATAYTACA
TNNCATTAATTANTNC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A
A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C A C G T

PH0110.1_Nkx1-2/Jaspar

Match Rank:7
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------AWATAYTACA
GTGCACTAATTAGTGCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A
C A T G C A G T A C T G T G A C T C G A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A C G T C T A G A T G C G C T A

OLIG1/MA0826.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AWATAYTACA
AACATATGTT---
 A C G T A C G T A C G T C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A
C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AWATAYTACA-----
CCGTATTATAAACAA
 C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A A C G T A C G T A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

PH0055.1_Hoxa7_2/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------AWATAYTACA
TNCCATTAATTACTNC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C T G A C G A T C T G A A G T C C G A T T C G A A G T C T G C A
A C G T C A G T A T G C A G T C T G C A A C G T G C A T G T C A C G T A A C G T C A G T C G T A T G A C A C G T T G C A T G A C A C G T