Information for 2-CGAT (Motif 12)

A G T C A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C T G
p-value:1e0
log p-value:-1.826e+00
Information Content per bp:1.530
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif70.00%
Number of Background Sequences with motif27816.0
Percentage of Background Sequences with motif62.21%
Average Position of motif in Targets518.2 +/- 266.6bp
Average Position of motif in Background555.3 +/- 308.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.77
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0044.1_Homez/Jaspar

Match Rank:1
Score:0.73
Offset:-8
Orientation:reverse strand
Alignment:--------CGAT-----
NNTAAAAACGATGTTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A T C G A C T C G A T T C G A C G T A C G T A G C T A G C T A A G T C C A T G C G T A C G A T A C T G C G A T C G A T C G A T G C A T

CUX2/MA0755.1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGAT--
TAATCGATAA
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T
G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:3
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----CGAT-
NTNATCGATA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T
G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A

CUX1/MA0754.1/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CGAT--
TAATCGATAA
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T
G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CGAT--
DGATCRATAN
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T
C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

GATA3/MA0037.3/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGAT----
AGATAAGA
 A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A A C T G C G T A A C G T G C T A C T G A T A C G T C G A

VENTX/MA0724.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGAT---
ACCGATTAG
 A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGAT-
RRTCAATA
 A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T
C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGAT----
AGATAASR
 A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A

PB0105.1_Arid3a_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CGAT------
NNATNTGATANNNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T