Information for 5-ACMCCTTAAA (Motif 5)

C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A C G T A A C T G C T A G A C G T A C T G A C G T
p-value:1e-6
log p-value:-1.584e+01
Information Content per bp:1.903
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif341.8
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets448.6 +/- 205.9bp
Average Position of motif in Background421.4 +/- 298.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3-2/MA0122.3/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ACMCCTTAAA
ATAACCACTTAAA
 A C G T A C G T A C G T C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A
C G T A C G A T C G T A C G T A T G A C G A T C G C T A G T A C G C A T G A C T G C T A C G T A G C T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACMCCTTAAA---
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACMCCTTAAA---
-NGYCATAAAWCH
 C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ACMCCTTAAA
ACCACTTAA-
 C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACMCCTTAAA---
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ACMCCTTAAA-
-CCYMATAAAA
 C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A A C G T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ACMCCTTAAA
----ATTAAA
 C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A
A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACMCCTTAAA
NGCAATTAAA
 C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ACMCCTTAAA--
--CYHATAAAAN
 C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ACMCCTTAAA----
AAACCTCGTAAAATTT
 A C G T A C G T C G T A A G T C G T C A A G T C G T A C A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T