Information for 3-GTCTGCGGCG (Motif 3)

A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G
Reverse Opposite:
G T A C A C T G A G T C G T A C C T A G A T G C C T G A A C T G T C G A G T A C
p-value:1e-8
log p-value:-1.930e+01
Information Content per bp:1.836
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif26.53%
Number of Background Sequences with motif1404.5
Percentage of Background Sequences with motif3.25%
Average Position of motif in Targets453.6 +/- 248.6bp
Average Position of motif in Background641.2 +/- 344.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GTCTGCGGCG
VBSYGTCTGG----
 A C G T A C G T A C G T A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCGGCG
CTGTCTGG----
 A C G T A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCGGCG--
GGGCCTGAGGCGGG
 A C G T A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G A C G T A C G T
A C T G C A T G A T C G T A G C A T G C A G C T T A C G T G C A T A C G T A C G T A G C A T C G T C A G A T C G

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGCGGCG
TGCCTGAGGCN
 A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCGGCG
TWGTCTGV----
 A C G T A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

ZNF317/MA1593.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGCGGCG-
NNTCTGCTGTNA
 A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G A C G T
C G T A C T A G C G A T G A T C G C A T C A T G G A T C G C A T A C T G G C A T A G C T G C T A

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCTGCGGCG--
ATTGCCTCAGGCAAT
 A C G T A C G T A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G A C G T A C G T
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCTGCGGCG--
ATTGCCTGAGGCAAT
 A C G T A C G T A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G A C G T A C G T
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T

TFAP2E/MA1569.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTCTGCGGCG
CGCCTCAGGCG
 A C G T A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G
G A T C A T C G A G T C A G T C A G C T T A G C T C G A A C T G A C T G A T G C C T A G

ZFP57/MA1583.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTCTGCGGCG----
-NNTGCGGCAANNN
 A C T G A G C T A G T C A G C T A T C G A G T C A C T G A C T G T G A C A C T G A C G T A C G T A C G T A C G T
A C G T T C G A A T G C A G C T T A C G G A T C A T C G C T A G A T G C T G C A T G C A A G C T T A C G T A G C