Information for 2-TCKCAAKCCT (Motif 2)

A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
Reverse Opposite:
C G T A C T A G A T C G T G C A A G C T A C G T A C T G G T C A A T C G C G T A
p-value:1e-8
log p-value:-1.998e+01
Information Content per bp:1.781
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.37%
Number of Background Sequences with motif447.8
Percentage of Background Sequences with motif1.04%
Average Position of motif in Targets344.8 +/- 278.6bp
Average Position of motif in Background532.3 +/- 318.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCKCAAKCCT
---CAAGCTT
 A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCKCAAKCCT
--CNAGGCCT
 A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TCKCAAKCCT-
-NYTAATCCYB
 A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T A C G T
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

TBX15/MA0803.1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TCKCAAKCCT
--TCACACCT
 A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------TCKCAAKCCT
AAAGACCTGTCAATCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TCKCAAKCCT
GCTGTCAA----
 A C G T A C G T A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TCKCAAKCCT
CCTGTCAA----
 A C G T A C G T A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TCKCAAKCCT-
---TAATCCCN
 A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T A C G T
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

TBX1/MA0805.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TCKCAAKCCT
--TCACACCT
 A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TCKCAAKCCT
NCTGTCAATCAN
 A C G T A C G T A C G T A T G C A C G T G T A C G T C A T C G A A C G T A T G C G A T C A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A