Information for 3-GAAAATGAAT (Motif 3)

A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T
Reverse Opposite:
G T C A A C G T C G A T A T G C G T C A A C G T A C G T A C G T A C G T T G A C
p-value:1e-7
log p-value:-1.831e+01
Information Content per bp:1.848
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif26.53%
Number of Background Sequences with motif1558.7
Percentage of Background Sequences with motif3.54%
Average Position of motif in Targets448.5 +/- 223.1bp
Average Position of motif in Background426.6 +/- 249.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ONECUT1/MA0679.2/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GAAAATGAAT-----
AAAAAATCAATAAATA
 A C G T A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A C G T A G C T A C T G A C T G A G C A T G T A C C T G A C G T A G A C T C T G A G C T A G C T A G C A T G C T A

ONECUT3/MA0757.1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GAAAATGAAT---
AAAAAATCAATAAT
 A C G T A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GAAAATGAAT--
GAAAGTGAAAGT
 A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

IRF7/MA0772.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GAAAATGAAT--
ACGAAAGCGAAAGT
 A C G T A C G T A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T
G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAAAATGAAT--
GAAACTGAAACT
 A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T
T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAAAATGAAT---
AAAAAATCGATAAT
 A C G T A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GAAAATGAAT
GACAATGNN-
 A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GAAAATGAAT--
GAAAMTGAAACT
 A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T
C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAAAATGAAT----
GGAAANTGAAACTNA
 A C G T A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T A C G T A C G T
T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

IRF1/MA0050.2/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GAAAATGAAT------
AAANNGAAAGTGAAAGTAAAN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A C G T A C G T A A C G T T A C G C G T A C G T A C A G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A