Information for 10-TGTGTGACAC (Motif 10)

A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C
Reverse Opposite:
A C T G G A C T A C T G A G C T A G T C C G T A G T A C T G C A A G T C C G T A
p-value:1e-2
log p-value:-6.806e+00
Information Content per bp:1.863
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif8.16%
Number of Background Sequences with motif405.3
Percentage of Background Sequences with motif0.92%
Average Position of motif in Targets402.2 +/- 248.9bp
Average Position of motif in Background527.8 +/- 301.3bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)2.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.2/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TGTGTGACAC---
TTTGAGTGACAGCTA
 A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PBX3/MA1114.1/Jaspar

Match Rank:2
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TGTGTGACAC----
GGGTGAGTGACAGGCGG
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGACAC-
BTGABTGACAGS
 A C G T A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTGACAC-
NTGATTGACAGN
 A C G T A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGTGTGACAC--
TGTCTGDCACCT
 A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGTGTGACAC--
TGAGTGACAGSC
 A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGTGTGACAC--
CTGTCTGTCACCT
 A C G T A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TGTGTGACAC
---TTGACAG
 A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C
A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TGTGTGACAC-
---TTGACAGG
 A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T
A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGTGTGACAC------
ATAAATGACACCTATCA
 A C G T A C G T A C T G A C G T A C T G A C G T A C T G C T G A A G T C C T G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A