Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 47)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 42392)	% of Background Sequences with Motif
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-3	-7.237e+00	0.3167	35.0	74.47%	21441.9	50.58%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-6.863e+00	0.3167	31.0	65.96%	18050.6	42.58%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-2	-5.832e+00	0.4300	27.0	57.45%	15522.7	36.62%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-2	-5.292e+00	0.5535	17.0	36.17%	8169.8	19.27%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.463e+00	1.0000	20.0	42.55%	11155.6	26.31%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-4.088e+00	1.0000	17.0	36.17%	9207.1	21.72%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-4.044e+00	1.0000	31.0	65.96%	21025.6	49.60%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.796e+00	1.0000	25.0	53.19%	16005.4	37.76%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-3.785e+00	1.0000	13.0	27.66%	6536.4	15.42%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-1	-3.577e+00	1.0000	8.0	17.02%	3309.6	7.81%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-1	-3.435e+00	1.0000	22.0	46.81%	13920.1	32.84%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.423e+00	1.0000	9.0	19.15%	4062.8	9.58%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-3.352e+00	1.0000	10.0	21.28%	4793.8	11.31%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.329e+00	1.0000	38.0	80.85%	28767.5	67.86%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-3.299e+00	1.0000	16.0	34.04%	9254.0	21.83%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.276e+00	1.0000	5.0	10.64%	1678.9	3.96%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-3.225e+00	1.0000	7.0	14.89%	2901.2	6.84%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-3.111e+00	1.0000	30.0	63.83%	21368.9	50.41%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.098e+00	1.0000	29.0	61.70%	20476.2	48.30%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.043e+00	1.0000	9.0	19.15%	4355.9	10.28%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-3.042e+00	1.0000	21.0	44.68%	13597.5	32.08%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-2.987e+00	1.0000	28.0	59.57%	19737.9	46.56%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.927e+00	1.0000	3.0	6.38%	767.8	1.81%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.856e+00	1.0000	15.0	31.91%	8983.7	21.19%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.772e+00	1.0000	5.0	10.64%	1936.7	4.57%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.735e+00	1.0000	20.0	42.55%	13187.6	31.11%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.693e+00	1.0000	12.0	25.53%	6863.0	16.19%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.563e+00	1.0000	10.0	21.28%	5509.2	13.00%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.553e+00	1.0000	5.0	10.64%	2066.7	4.88%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.514e+00	1.0000	14.0	29.79%	8621.2	20.34%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.513e+00	1.0000	3.0	6.38%	914.8	2.16%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-2.471e+00	1.0000	11.0	23.40%	6355.3	14.99%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.350e+00	1.0000	12.0	25.53%	7264.7	17.14%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.304e+00	1.0000	14.0	29.79%	8898.9	20.99%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.277e+00	1.0000	37.0	78.72%	29345.4	69.22%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.261e+00	1.0000	2.0	4.26%	493.1	1.16%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.249e+00	1.0000	11.0	23.40%	6615.4	15.61%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.201e+00	1.0000	16.0	34.04%	10667.1	25.16%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.197e+00	1.0000	4.0	8.51%	1657.3	3.91%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.186e+00	1.0000	8.0	17.02%	4427.1	10.44%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.136e+00	1.0000	17.0	36.17%	11594.1	27.35%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.118e+00	1.0000	24.0	51.06%	17610.6	41.54%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.106e+00	1.0000	8.0	17.02%	4511.6	10.64%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.062e+00	1.0000	3.0	6.38%	1118.1	2.64%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.060e+00	1.0000	13.0	27.66%	8442.3	19.91%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.039e+00	1.0000	3.0	6.38%	1130.7	2.67%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.029e+00	1.0000	10.0	21.28%	6117.4	14.43%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.944e+00	1.0000	3.0	6.38%	1181.2	2.79%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.939e+00	1.0000	23.0	48.94%	17065.7	40.26%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.876e+00	1.0000	13.0	27.66%	8718.7	20.57%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.873e+00	1.0000	11.0	23.40%	7113.9	16.78%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.843e+00	1.0000	31.0	65.96%	24449.6	57.67%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.840e+00	1.0000	31.0	65.96%	24454.4	57.69%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.829e+00	1.0000	8.0	17.02%	4826.3	11.38%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.825e+00	1.0000	23.0	48.94%	17286.3	40.78%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.825e+00	1.0000	10.0	21.28%	6388.7	15.07%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.804e+00	1.0000	16.0	34.04%	11315.9	26.69%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.782e+00	1.0000	25.0	53.19%	19139.9	45.15%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.748e+00	1.0000	4.0	8.51%	1972.0	4.65%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.699e+00	1.0000	11.0	23.40%	7371.8	17.39%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.699e+00	1.0000	32.0	68.09%	25669.4	60.55%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.690e+00	1.0000	14.0	29.79%	9847.5	23.23%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.679e+00	1.0000	9.0	19.15%	5801.6	13.69%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.656e+00	1.0000	12.0	25.53%	8255.4	19.47%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.650e+00	1.0000	33.0	70.21%	26703.2	62.99%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.638e+00	1.0000	21.0	44.68%	15917.4	37.55%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.628e+00	1.0000	34.0	72.34%	27685.4	65.31%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.623e+00	1.0000	14.0	29.79%	9967.4	23.51%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.589e+00	1.0000	15.0	31.91%	10868.1	25.64%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.568e+00	1.0000	11.0	23.40%	7582.9	17.89%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.534e+00	1.0000	5.0	10.64%	2892.2	6.82%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.527e+00	1.0000	11.0	23.40%	7650.3	18.05%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.498e+00	1.0000	6.0	12.77%	3695.8	8.72%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.468e+00	1.0000	5.0	10.64%	2965.6	7.00%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.467e+00	1.0000	19.0	40.43%	14542.4	34.30%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.467e+00	1.0000	6.0	12.77%	3734.5	8.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.447e+00	1.0000	6.0	12.77%	3760.0	8.87%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.446e+00	1.0000	8.0	17.02%	5343.9	12.61%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.395e+00	1.0000	10.0	21.28%	7054.5	16.64%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.381e+00	1.0000	32.0	68.09%	26379.7	62.23%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.365e+00	1.0000	6.0	12.77%	3866.8	9.12%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.360e+00	1.0000	18.0	38.30%	13913.2	32.82%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.360e+00	1.0000	3.0	6.38%	1584.1	3.74%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.358e+00	1.0000	5.0	10.64%	3093.0	7.30%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.352e+00	1.0000	14.0	29.79%	10492.0	24.75%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.337e+00	1.0000	3.0	6.38%	1604.9	3.79%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.319e+00	1.0000	9.0	19.15%	6364.0	15.01%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.303e+00	1.0000	4.0	8.51%	2386.3	5.63%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.302e+00	1.0000	16.0	34.04%	12315.9	29.05%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.296e+00	1.0000	8.0	17.02%	5580.8	13.16%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.287e+00	1.0000	2.0	4.26%	930.4	2.19%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.284e+00	1.0000	13.0	27.66%	9783.5	23.08%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.275e+00	1.0000	21.0	44.68%	16740.3	39.49%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.271e+00	1.0000	10.0	21.28%	7280.5	17.17%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.253e+00	1.0000	21.0	44.68%	16796.7	39.62%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.245e+00	1.0000	6.0	12.77%	4034.2	9.52%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.244e+00	1.0000	19.0	40.43%	15060.8	35.53%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.232e+00	1.0000	6.0	12.77%	4054.6	9.56%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.231e+00	1.0000	25.0	53.19%	20407.2	48.14%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.230e+00	1.0000	7.0	14.89%	4869.1	11.49%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.224e+00	1.0000	3.0	6.38%	1707.3	4.03%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.221e+00	1.0000	12.0	25.53%	9067.8	21.39%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.217e+00	1.0000	7.0	14.89%	4891.7	11.54%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.197e+00	1.0000	32.0	68.09%	26833.7	63.30%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.184e+00	1.0000	16.0	34.04%	12590.2	29.70%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.173e+00	1.0000	1.0	2.13%	332.5	0.78%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.163e+00	1.0000	1.0	2.13%	336.3	0.79%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.162e+00	1.0000	8.0	17.02%	5813.4	13.71%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.150e+00	1.0000	3.0	6.38%	1781.6	4.20%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-1.140e+00	1.0000	25.0	53.19%	20651.8	48.72%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.137e+00	1.0000	29.0	61.70%	24261.8	57.23%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.135e+00	1.0000	5.0	10.64%	3387.4	7.99%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.133e+00	1.0000	3.0	6.38%	1799.9	4.25%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.124e+00	1.0000	3.0	6.38%	1808.1	4.27%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.098e+00	1.0000	5.0	10.64%	3441.6	8.12%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.097e+00	1.0000	3.0	6.38%	1838.5	4.34%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.087e+00	1.0000	11.0	23.40%	8504.2	20.06%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.070e+00	1.0000	4.0	8.51%	2667.7	6.29%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.065e+00	1.0000	38.0	80.85%	32715.7	77.17%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.062e+00	1.0000	19.0	40.43%	15536.3	36.65%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.061e+00	1.0000	14.0	29.79%	11157.5	26.32%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.053e+00	1.0000	19.0	40.43%	15560.5	36.71%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.041e+00	1.0000	26.0	55.32%	21827.5	51.49%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.021e+00	1.0000	5.0	10.64%	3559.7	8.40%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.930e-01	1.0000	3.0	6.38%	1957.5	4.62%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-9.929e-01	1.0000	11.0	23.40%	8723.9	20.58%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-9.902e-01	1.0000	36.0	76.60%	31057.2	73.26%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.889e-01	1.0000	2.0	4.26%	1165.2	2.75%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-9.657e-01	1.0000	19.0	40.43%	15811.9	37.30%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-9.622e-01	1.0000	6.0	12.77%	4500.8	10.62%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.607e-01	1.0000	8.0	17.02%	6210.1	14.65%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-9.573e-01	1.0000	22.0	46.81%	18502.7	43.65%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-9.432e-01	1.0000	3.0	6.38%	2019.9	4.76%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.395e-01	1.0000	24.0	51.06%	20343.0	47.99%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.289e-01	1.0000	2.0	4.26%	1223.1	2.89%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-9.277e-01	1.0000	18.0	38.30%	15039.8	35.48%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-9.247e-01	1.0000	18.0	38.30%	15048.7	35.50%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.216e-01	1.0000	3.0	6.38%	2047.3	4.83%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-9.115e-01	1.0000	10.0	21.28%	8054.7	19.00%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-9.105e-01	1.0000	9.0	19.15%	7187.6	16.95%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.039e-01	1.0000	10.0	21.28%	8073.5	19.04%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-9.023e-01	1.0000	18.0	38.30%	15116.3	35.66%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-8.781e-01	1.0000	25.0	53.19%	21435.9	50.56%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-8.702e-01	1.0000	1.0	2.13%	486.9	1.15%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-8.608e-01	1.0000	11.0	23.40%	9060.7	21.37%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.547e-01	1.0000	4.0	8.51%	2989.6	7.05%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.482e-01	1.0000	7.0	14.89%	5593.7	13.19%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-8.478e-01	1.0000	9.0	19.15%	7340.7	17.32%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-8.474e-01	1.0000	1.0	2.13%	501.7	1.18%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.354e-01	1.0000	6.0	12.77%	4751.4	11.21%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-8.097e-01	1.0000	17.0	36.17%	14522.8	34.26%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-8.066e-01	1.0000	6.0	12.77%	4813.4	11.35%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.064e-01	1.0000	10.0	21.28%	8328.8	19.65%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-8.063e-01	1.0000	7.0	14.89%	5689.8	13.42%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-7.992e-01	1.0000	2.0	4.26%	1365.9	3.22%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.990e-01	1.0000	25.0	53.19%	21703.5	51.20%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-7.955e-01	1.0000	13.0	27.66%	11014.1	25.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.949e-01	1.0000	30.0	63.83%	26206.4	61.82%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-7.908e-01	1.0000	8.0	17.02%	6606.8	15.58%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-7.832e-01	1.0000	28.0	59.57%	24449.4	57.67%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.818e-01	1.0000	8.0	17.02%	6629.8	15.64%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.561e-01	1.0000	5.0	10.64%	4044.1	9.54%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.558e-01	1.0000	6.0	12.77%	4927.9	11.62%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-7.538e-01	1.0000	2.0	4.26%	1421.1	3.35%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-7.499e-01	1.0000	2.0	4.26%	1426.4	3.36%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-7.409e-01	1.0000	10.0	21.28%	8514.2	20.08%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.407e-01	1.0000	2.0	4.26%	1438.1	3.39%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-7.376e-01	1.0000	9.0	19.15%	7634.8	18.01%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.340e-01	1.0000	1.0	2.13%	585.4	1.38%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.339e-01	1.0000	7.0	14.89%	5866.3	13.84%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.263e-01	1.0000	11.0	23.40%	9449.7	22.29%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-7.161e-01	1.0000	12.0	25.53%	10374.8	24.47%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-7.148e-01	1.0000	11.0	23.40%	9485.3	22.37%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-7.108e-01	1.0000	4.0	8.51%	3252.3	7.67%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.063e-01	1.0000	2.0	4.26%	1484.1	3.50%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.034e-01	1.0000	6.0	12.77%	5052.0	11.92%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-6.948e-01	1.0000	18.0	38.30%	15816.8	37.31%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.890e-01	1.0000	5.0	10.64%	4193.0	9.89%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-6.862e-01	1.0000	36.0	76.60%	31965.5	75.40%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-6.816e-01	1.0000	12.0	25.53%	10488.3	24.74%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.731e-01	1.0000	3.0	6.38%	2430.9	5.73%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.660e-01	1.0000	3.0	6.38%	2443.3	5.76%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.571e-01	1.0000	24.0	51.06%	21337.7	50.33%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.567e-01	1.0000	23.0	48.94%	20443.2	48.22%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.552e-01	1.0000	1.0	2.13%	655.7	1.55%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-6.498e-01	1.0000	8.0	17.02%	6994.7	16.50%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.480e-01	1.0000	1.0	2.13%	662.5	1.56%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-6.461e-01	1.0000	12.0	25.53%	10610.5	25.03%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-6.440e-01	1.0000	9.0	19.15%	7914.3	18.67%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.402e-01	1.0000	2.0	4.26%	1580.4	3.73%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-6.392e-01	1.0000	7.0	14.89%	6122.9	14.44%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.350e-01	1.0000	2.0	4.26%	1588.4	3.75%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-6.298e-01	1.0000	15.0	31.91%	13370.5	31.54%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.245e-01	1.0000	25.0	53.19%	22365.2	52.76%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.226e-01	1.0000	6.0	12.77%	5262.8	12.41%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.223e-01	1.0000	11.0	23.40%	9792.2	23.10%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.194e-01	1.0000	26.0	55.32%	23281.0	54.92%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.153e-01	1.0000	2.0	4.26%	1620.0	3.82%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.974e-01	1.0000	10.0	21.28%	8974.3	21.17%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.974e-01	1.0000	1.0	2.13%	714.9	1.69%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.974e-01	1.0000	1.0	2.13%	714.9	1.69%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.924e-01	1.0000	21.0	44.68%	18916.7	44.62%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.901e-01	1.0000	3.0	6.38%	2591.6	6.11%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-5.862e-01	1.0000	7.0	14.89%	6280.4	14.81%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-5.848e-01	1.0000	16.0	34.04%	14450.1	34.09%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.843e-01	1.0000	19.0	40.43%	17154.2	40.46%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-5.815e-01	1.0000	19.0	40.43%	17166.8	40.49%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.707e-01	1.0000	4.0	8.51%	3563.9	8.41%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.706e-01	1.0000	21.0	44.68%	19011.1	44.85%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.705e-01	1.0000	7.0	14.89%	6329.8	14.93%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.607e-01	1.0000	2.0	4.26%	1711.2	4.04%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.582e-01	1.0000	11.0	23.40%	10027.2	23.65%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-5.569e-01	1.0000	1.0	2.13%	760.7	1.79%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.490e-01	1.0000	8.0	17.02%	7318.9	17.26%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-5.484e-01	1.0000	2.0	4.26%	1733.7	4.09%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.478e-01	1.0000	8.0	17.02%	7322.3	17.27%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-5.475e-01	1.0000	8.0	17.02%	7323.4	17.28%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-5.388e-01	1.0000	6.0	12.77%	5507.2	12.99%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.292e-01	1.0000	1.0	2.13%	794.1	1.87%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.290e-01	1.0000	3.0	6.38%	2726.0	6.43%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.287e-01	1.0000	10.0	21.28%	9227.1	21.77%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.276e-01	1.0000	11.0	23.40%	10147.6	23.94%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.235e-01	1.0000	36.0	76.60%	32553.0	76.79%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.189e-01	1.0000	6.0	12.77%	5570.3	13.14%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-5.164e-01	1.0000	11.0	23.40%	10192.9	24.04%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-5.161e-01	1.0000	12.0	25.53%	11108.2	26.20%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.147e-01	1.0000	11.0	23.40%	10199.8	24.06%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.130e-01	1.0000	1.0	2.13%	815.7	1.92%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.033e-01	1.0000	1.0	2.13%	828.1	1.95%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.004e-01	1.0000	3.0	6.38%	2793.9	6.59%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-4.967e-01	1.0000	13.0	27.66%	12105.1	28.55%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.967e-01	1.0000	1.0	2.13%	837.6	1.98%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-4.922e-01	1.0000	13.0	27.66%	12125.2	28.60%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.854e-01	1.0000	3.0	6.38%	2830.6	6.68%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.854e-01	1.0000	2.0	4.26%	1855.6	4.38%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.831e-01	1.0000	1.0	2.13%	856.4	2.02%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-4.744e-01	1.0000	2.0	4.26%	1878.1	4.43%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.727e-01	1.0000	9.0	19.15%	8528.3	20.12%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.711e-01	1.0000	6.0	12.77%	5731.7	13.52%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-4.699e-01	1.0000	7.0	14.89%	6675.5	15.75%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.657e-01	1.0000	23.0	48.94%	21302.5	50.25%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-4.657e-01	1.0000	35.0	74.47%	31918.4	75.29%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.632e-01	1.0000	2.0	4.26%	1902.0	4.49%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-4.629e-01	1.0000	27.0	57.45%	24887.0	58.71%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-4.622e-01	1.0000	3.0	6.38%	2890.1	6.82%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-4.604e-01	1.0000	9.0	19.15%	8579.9	20.24%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-4.496e-01	1.0000	6.0	12.77%	5808.8	13.70%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-4.482e-01	1.0000	18.0	38.30%	16888.1	39.84%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.442e-01	1.0000	23.0	48.94%	21414.1	50.51%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.427e-01	1.0000	21.0	44.68%	19626.7	46.30%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.416e-01	1.0000	2.0	4.26%	1951.0	4.60%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-4.360e-01	1.0000	10.0	21.28%	9615.6	22.68%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-4.325e-01	1.0000	4.0	8.51%	3950.4	9.32%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.270e-01	1.0000	2.0	4.26%	1984.4	4.68%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.168e-01	1.0000	13.0	27.66%	12484.1	29.45%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.151e-01	1.0000	3.0	6.38%	3021.1	7.13%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-4.134e-01	1.0000	16.0	34.04%	15253.9	35.98%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.131e-01	1.0000	30.0	63.83%	27795.1	65.57%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.104e-01	1.0000	2.0	4.26%	2024.2	4.77%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-4.104e-01	1.0000	9.0	19.15%	8798.5	20.75%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-4.078e-01	1.0000	21.0	44.68%	19817.0	46.75%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.068e-01	1.0000	2.0	4.26%	2033.9	4.80%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.052e-01	1.0000	12.0	25.53%	11619.2	27.41%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.020e-01	1.0000	2.0	4.26%	2045.1	4.82%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-3.990e-01	1.0000	6.0	12.77%	6004.0	14.16%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-3.878e-01	1.0000	6.0	12.77%	6049.2	14.27%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.862e-01	1.0000	1.0	2.13%	1014.3	2.39%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.842e-01	1.0000	22.0	46.81%	20851.1	49.19%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-3.834e-01	1.0000	18.0	38.30%	17242.5	40.67%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.744e-01	1.0000	2.0	4.26%	2117.3	4.99%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.716e-01	1.0000	4.0	8.51%	4159.9	9.81%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.702e-01	1.0000	4.0	8.51%	4164.7	9.82%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.698e-01	1.0000	7.0	14.89%	7089.3	16.72%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.689e-01	1.0000	8.0	17.02%	8049.6	18.99%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.666e-01	1.0000	3.0	6.38%	3172.2	7.48%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-3.544e-01	1.0000	14.0	29.79%	13748.5	32.43%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.541e-01	1.0000	1.0	2.13%	1077.8	2.54%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.445e-01	1.0000	10.0	21.28%	10071.3	23.76%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-3.417e-01	1.0000	2.0	4.26%	2211.0	5.22%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.406e-01	1.0000	6.0	12.77%	6257.1	14.76%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.389e-01	1.0000	3.0	6.38%	3267.6	7.71%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.348e-01	1.0000	15.0	31.91%	14790.8	34.89%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.313e-01	1.0000	1.0	2.13%	1126.5	2.66%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.270e-01	1.0000	20.0	42.55%	19405.8	45.78%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-3.251e-01	1.0000	4.0	8.51%	4341.2	10.24%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.114e-01	1.0000	14.0	29.79%	14014.1	33.06%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-3.094e-01	1.0000	5.0	10.64%	5416.5	12.78%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-3.069e-01	1.0000	6.0	12.77%	6421.8	15.15%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.023e-01	1.0000	6.0	12.77%	6445.6	15.20%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.007e-01	1.0000	2.0	4.26%	2340.8	5.52%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.001e-01	1.0000	14.0	29.79%	14089.2	33.23%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.975e-01	1.0000	3.0	6.38%	3424.9	8.08%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.891e-01	1.0000	18.0	38.30%	17849.4	42.10%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.881e-01	1.0000	10.0	21.28%	10404.3	24.54%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.868e-01	1.0000	10.0	21.28%	10412.5	24.56%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.847e-01	1.0000	8.0	17.02%	8501.0	20.05%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.827e-01	1.0000	2.0	4.26%	2403.3	5.67%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.794e-01	1.0000	20.0	42.55%	19738.7	46.56%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-2.777e-01	1.0000	14.0	29.79%	14244.7	33.60%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-2.751e-01	1.0000	16.0	34.04%	16116.1	38.02%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.744e-01	1.0000	3.0	6.38%	3521.6	8.31%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.601e-01	1.0000	4.0	8.51%	4640.2	10.95%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.594e-01	1.0000	6.0	12.77%	6682.1	15.76%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.593e-01	1.0000	5.0	10.64%	5673.1	13.38%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-2.585e-01	1.0000	7.0	14.89%	7682.8	18.12%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.576e-01	1.0000	4.0	8.51%	4653.8	10.98%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.573e-01	1.0000	36.0	76.60%	33838.5	79.82%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.553e-01	1.0000	8.0	17.02%	8686.7	20.49%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.536e-01	1.0000	5.0	10.64%	5705.6	13.46%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.492e-01	1.0000	5.0	10.64%	5730.2	13.52%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.488e-01	1.0000	2.0	4.26%	2533.1	5.98%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.388e-01	1.0000	6.0	12.77%	6808.8	16.06%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.321e-01	1.0000	12.0	25.53%	12707.5	29.98%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.218e-01	1.0000	19.0	40.43%	19297.0	45.52%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.166e-01	1.0000	9.0	19.15%	9942.2	23.45%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-2.147e-01	1.0000	10.0	21.28%	10930.3	25.78%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-2.119e-01	1.0000	11.0	23.40%	11917.0	28.11%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-2.088e-01	1.0000	4.0	8.51%	4929.1	11.63%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.061e-01	1.0000	1.0	2.13%	1489.1	3.51%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.058e-01	1.0000	12.0	25.53%	12927.1	30.49%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.030e-01	1.0000	15.0	31.91%	15781.2	37.23%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.834e-01	1.0000	16.0	34.04%	16902.4	39.87%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.786e-01	1.0000	1.0	2.13%	1602.2	3.78%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.637e-01	1.0000	2.0	4.26%	2959.7	6.98%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.626e-01	1.0000	7.0	14.89%	8407.1	19.83%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.609e-01	1.0000	7.0	14.89%	8423.5	19.87%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.528e-01	1.0000	8.0	17.02%	9516.2	22.45%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.520e-01	1.0000	20.0	42.55%	20914.8	49.34%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.491e-01	1.0000	14.0	29.79%	15401.9	36.33%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.389e-01	1.0000	10.0	21.28%	11662.0	27.51%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.382e-01	1.0000	14.0	29.79%	15533.3	36.64%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.376e-01	1.0000	4.0	8.51%	5463.1	12.89%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.367e-01	1.0000	12.0	25.53%	13639.6	32.17%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.345e-01	1.0000	1.0	2.13%	1829.9	4.32%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.337e-01	1.0000	1.0	2.13%	1834.6	4.33%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.326e-01	1.0000	5.0	10.64%	6605.0	15.58%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.302e-01	1.0000	5.0	10.64%	6628.3	15.64%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.288e-01	1.0000	12.0	25.53%	13738.1	32.41%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.285e-01	1.0000	4.0	8.51%	5548.9	13.09%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.259e-01	1.0000	1.0	2.13%	1882.1	4.44%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.255e-01	1.0000	3.0	6.38%	4436.4	10.46%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.254e-01	1.0000	2.0	4.26%	3228.6	7.62%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-1.246e-01	1.0000	13.0	27.66%	14757.2	34.81%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.226e-01	1.0000	2.0	4.26%	3251.3	7.67%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.218e-01	1.0000	6.0	12.77%	7788.1	18.37%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.173e-01	1.0000	8.0	17.02%	9920.6	23.40%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.166e-01	1.0000	10.0	21.28%	11941.6	28.17%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.165e-01	1.0000	18.0	38.30%	19558.4	46.14%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.133e-01	1.0000	4.0	8.51%	5704.3	13.46%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.091e-01	1.0000	3.0	6.38%	4595.2	10.84%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.081e-01	1.0000	26.0	55.32%	26800.2	63.22%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.070e-01	1.0000	15.0	31.91%	16912.8	39.90%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.070e-01	1.0000	14.0	29.79%	15965.2	37.66%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.033e-01	1.0000	3.0	6.38%	4656.2	10.98%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.023e-01	1.0000	15.0	31.91%	16985.1	40.07%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-1.013e-01	1.0000	16.0	34.04%	17940.3	42.32%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.005e-01	1.0000	12.0	25.53%	14142.5	33.36%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.002e-01	1.0000	17.0	36.17%	18889.2	44.56%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.860e-02	1.0000	1.0	2.13%	2081.3	4.91%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.848e-02	1.0000	1.0	2.13%	2082.6	4.91%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-9.821e-02	1.0000	3.0	6.38%	4714.0	11.12%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-9.820e-02	1.0000	12.0	25.53%	14179.0	33.45%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-9.659e-02	1.0000	22.0	46.81%	23483.8	55.40%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-9.346e-02	1.0000	13.0	27.66%	15226.5	35.92%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-9.080e-02	1.0000	13.0	27.66%	15272.3	36.03%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.618e-02	1.0000	2.0	4.26%	3604.0	8.50%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.544e-02	1.0000	4.0	8.51%	6048.5	14.27%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.318e-02	1.0000	10.0	21.28%	12460.2	29.39%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-8.193e-02	1.0000	11.0	23.40%	13479.3	31.80%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-7.924e-02	1.0000	16.0	34.04%	18337.9	43.26%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-7.472e-02	1.0000	13.0	27.66%	15576.9	36.74%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.299e-02	1.0000	4.0	8.51%	6236.8	14.71%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.154e-02	1.0000	1.0	2.13%	2344.7	5.53%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.058e-02	1.0000	13.0	27.66%	15663.3	36.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-6.923e-02	1.0000	1.0	2.13%	2371.4	5.59%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.741e-02	1.0000	1.0	2.13%	2393.9	5.65%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.685e-02	1.0000	2.0	4.26%	3854.7	9.09%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.915e-02	1.0000	2.0	4.26%	3974.7	9.38%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-5.886e-02	1.0000	7.0	14.89%	9846.5	23.23%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.720e-02	1.0000	7.0	14.89%	9884.5	23.32%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.482e-02	1.0000	3.0	6.38%	5354.2	12.63%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-5.252e-02	1.0000	5.0	10.64%	7784.8	18.36%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.897e-02	1.0000	11.0	23.40%	14232.6	33.57%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.098e-02	1.0000	5.0	10.64%	8082.6	19.07%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-3.760e-02	1.0000	12.0	25.53%	15594.7	36.79%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.712e-02	1.0000	2.0	4.26%	4426.0	10.44%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.637e-02	1.0000	24.0	51.06%	26649.6	62.86%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.390e-02	1.0000	2.0	4.26%	4512.4	10.64%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.021e-02	1.0000	15.0	31.91%	18799.6	44.35%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.780e-02	1.0000	24.0	51.06%	26991.0	63.67%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.379e-02	1.0000	19.0	40.43%	22814.5	53.82%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-2.145e-02	1.0000	6.0	12.77%	9990.1	23.57%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.041e-02	1.0000	1.0	2.13%	3379.0	7.97%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.613e-02	1.0000	13.0	27.66%	17681.7	41.71%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.463e-02	1.0000	29.0	61.70%	31788.8	74.99%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.316e-02	1.0000	28.0	59.57%	31111.2	73.39%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.022e-02	1.0000	4.0	8.51%	8390.4	19.79%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.017e-02	1.0000	4.0	8.51%	8395.9	19.80%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.004e-02	1.0000	2.0	4.26%	5643.9	13.31%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.407e-03	1.0000	1.0	2.13%	4103.4	9.68%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-6.580e-03	1.0000	7.0	14.89%	12443.4	29.35%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.455e-03	1.0000	1.0	2.13%	4317.1	10.18%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	0.0	0.00%	1269.8	3.00%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-0.000e+00	1.0000	0.0	0.00%	20.9	0.05%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-0.000e+00	1.0000	0.0	0.00%	474.2	1.12%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-0.000e+00	1.0000	0.0	0.00%	101.1	0.24%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	545.1	1.29%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-0.000e+00	1.0000	0.0	0.00%	216.7	0.51%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-0.000e+00	1.0000	0.0	0.00%	33.8	0.08%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	0.0	0.00%	599.6	1.41%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-0.000e+00	1.0000	0.0	0.00%	1448.9	3.42%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	4035.0	9.52%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-0.000e+00	1.0000	0.0	0.00%	1441.8	3.40%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	339.5	0.80%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	0.0	0.00%	677.6	1.60%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	401.7	0.95%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-0.000e+00	1.0000	0.0	0.00%	602.9	1.42%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-0.000e+00	1.0000	0.0	0.00%	493.8	1.16%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-0.000e+00	1.0000	0.0	0.00%	220.7	0.52%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-0.000e+00	1.0000	0.0	0.00%	444.9	1.05%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-0.000e+00	1.0000	0.0	0.00%	136.8	0.32%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	197.5	0.47%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	162.7	0.38%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	407.8	0.96%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	214.5	0.51%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	23.7	0.06%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	228.9	0.54%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	0.000e+00	1.0000	0.0	0.00%	520.2	1.23%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	0.000e+00	1.0000	0.0	0.00%	992.6	2.34%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	155.3	0.37%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	1834.8	4.33%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	232.6	0.55%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	115.4	0.27%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	0.000e+00	1.0000	0.0	0.00%	1371.8	3.24%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	149.5	0.35%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	0.000e+00	1.0000	0.0	0.00%	1933.8	4.56%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1243.8	2.93%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1243.8	2.93%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	0.0	0.00%	1886.0	4.45%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	958.0	2.26%