Information for 5-ATTCRAACCC (Motif 5)

C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C G T A C G T A G C T A C T G G T C A C G T A A C G T
p-value:1e-6
log p-value:-1.407e+01
Information Content per bp:1.901
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif12.77%
Number of Background Sequences with motif281.2
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets542.7 +/- 303.2bp
Average Position of motif in Background501.8 +/- 303.4bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ATTCRAACCC
NATTCAAAT--
 A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

POU5F1/MA1115.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATTCRAACCC
ATATGCAAATT-
 A C G T A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATTCRAACCC---
ACTATGCCAACCTACC
 A C G T A C G T A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATTCRAACCC
TATGCAAATC-
 A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATTCRAACCC
TTATGCAAAT--
 A C G T A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

POU2F3/MA0627.2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATTCRAACCC
AATATGCAAATAA
 A C G T A C G T A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
G C T A C G T A G C A T C G T A C A G T C A T G A G T C C G T A C G T A C G T A C G A T C G T A G C T A

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATTCRAACCC
ATGCCAACC-
 C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATTCRAACCC
TATGCAAAT--
 A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATTCRAACCC
AGATGCAATCCC
 A C G T A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATTCRAACCC
CGGTTTCAAA---
 A C G T A C G T A C G T C G T A A C G T A C G T A G T C C T G A C G T A C G T A A G T C G T A C A G T C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T