Information for 3-CAAGGGACAA (Motif 3)

A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A
Reverse Opposite:
A C G T C G A T A T C G A C G T A G T C A G T C A G T C A C G T A C G T A C T G
p-value:1e-9
log p-value:-2.074e+01
Information Content per bp:1.946
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif19.15%
Number of Background Sequences with motif420.5
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets517.4 +/- 322.7bp
Average Position of motif in Background467.2 +/- 270.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ebf2/MA1604.1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CAAGGGACAA
TTCCCAAGGGACT-
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A
A C G T A G C T T A G C G A T C G A T C G T C A C T G A T C A G C T A G C T A G T C G A T G A C G A C T A C G T

EBF3/MA1637.1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAAGGGACAA
TTCCCAAGGGAAT-
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A
A C G T A G C T T A G C G A T C G A T C G T C A C T G A T C A G C T A G T C A G T C G A T G C A G C A T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAAGGGACAA
CCAGGAACAG
 A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAAGGGACAA
TCCCNNGGGACN-
 A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A
G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CAAGGGACAA---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAAGGGACAA---
CAAAGGTCAAGGG
 A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAAGGGACAA
CAAAGGTCAG
 A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAAGGGACAA
CAAAGKTCAA
 A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAAGGGACAA------
NNAGGGACAAGGGCNC
 A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGGGACAA
DBTCCCHWGGGAVTN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A C T G C G T A T A G C C G T A C G T A
C G T A A C G T A G C T A G T C G A T C G A T C G A C T C G T A C T A G C T A G T C A G T C G A T G A C G A C T C G A T