Information for 5-GGTTAGAATC (Motif 6)

A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C
Reverse Opposite:
C T A G C G T A A C G T G C A T A G T C A C G T C G T A C G T A A G T C A G T C
p-value:1e-2
log p-value:-4.875e+00
Information Content per bp:1.872
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif103.8
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets605.8 +/- 82.1bp
Average Position of motif in Background553.5 +/- 230.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGTTAGAATC
-ATTTGAATT
 A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGTTAGAATC--
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGTTAGAATC--
NNAGATNVNWATCTN
 A C G T A C G T A C G T A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C A C G T A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

GATA1/MA0035.4/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGTTAGAATC
NNAGATTAGAN--
 A C G T A C G T A C G T A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C
C G T A G C A T C G T A C A T G C G T A C G A T G C A T G C T A C A T G C G T A G C T A A C G T A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGTTAGAATC--
TATCATTAGAACGCT
 A C G T A C G T A C G T A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C A C G T A C G T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGTTAGAATC--
--TTTGAAACCG
 A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0174.1_Sox30_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGTTAGAATC---
TAAGATTATAATACGG
 A C G T A C G T A C G T A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGTTAGAATC
CAGGTAAGTAT-
 A C G T A C G T A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGTTAGAATC
GGTTGGCAT-
 A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGTTAGAATC
BTVATTWGCATA
 A C G T A C G T A C T G C T A G A C G T A C G T T G C A A C T G C G T A C G T A A C G T A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A