Information for 2-AATAGGTTTA (Motif 2)

C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A
Reverse Opposite:
A C G T C T G A G T C A C G T A A G T C A T G C A C G T C T G A A C G T A C G T
p-value:1e-6
log p-value:-1.419e+01
Information Content per bp:1.868
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif8.00%
Number of Background Sequences with motif51.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets529.5 +/- 302.0bp
Average Position of motif in Background411.6 +/- 286.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRHL2/MA1105.2/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AATAGGTTTA
AAAACAGGTTTT
 A C G T A C G T C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A
T G C A T C G A C T G A C T G A T A G C G C T A C T A G T A C G G A C T G A C T A G C T C A G T

GRHL1/MA0647.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AATAGGTTTA
AAAACCGGTTTT
 A C G T A C G T C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A
G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AATAGGTTTA
CCTTAATNGNTTTT
 A C G T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

SCRT2/MA0744.2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AATAGGTTTA-
AAAGCAACAGGTGGTT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A A C G T
C T G A T C G A C G T A A C T G G A T C G T C A C T G A T A G C G C T A C T A G C A T G G A C T C A T G C A T G G A C T G C A T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AATAGGTTTA
GTAATCDGATTA
 A C G T A C G T C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AATAGGTTTA-
AAGAGGATTAG
 C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AATAGGTTTA
CCAAAAATAG-----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AATAGGTTTA-
NNNTTAATTGGTTTTT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

SNAI3/MA1559.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AATAGGTTTA
AACAGGTGCA
 C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A
C T G A C T G A G A T C C T G A C T A G A T C G A C G T C T A G A G T C T C G A

SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATAGGTTTA
GCAACAGGTG--
 A C G T A C G T C G T A C G T A A G C T C G T A A T C G C T A G A C G T A C G T A G C T G T C A
A C T G A G T C G T C A C G T A A G T C C G T A C T A G C T A G G A C T C A T G A C G T A C G T