Information for 3-CAATTAGAAG (Motif 3)

A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
Reverse Opposite:
A G T C A C G T A C G T A G T C C G A T G T C A C G T A A C G T A G C T A C T G
p-value:1e-8
log p-value:-1.983e+01
Information Content per bp:1.877
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif17.02%
Number of Background Sequences with motif303.5
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets701.9 +/- 257.3bp
Average Position of motif in Background471.4 +/- 318.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CAATTAGAAG
BCMATTAG---
 A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGAAG
CCAATTAG---
 A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T

LHX2/MA0700.2/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CAATTAGAAG
AACCAATTAAT--
 A C G T A C G T A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGAAG
CCAATTAA---
 A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGAAG
CCAATTAA---
 A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGAAG
GCAATTAG---
 A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAATTAGAAG
GCCAATTAGC--
 A C G T A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T A C G T

TLX2/MA1577.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGAAG
CTAATTAG---
 A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
A G T C G A C T C T G A C G T A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAATTAGAAG
ACCAATTAGC--
 A C G T A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T A C G T

EN1/MA0027.2/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGAAG
CTAATTAG---
 A C G T A G T C C T G A G T C A A C G T A C G T C G T A A C T G C G T A C G T A C T A G
A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T