Information for 4-CTTACCATGA (Motif 4)

A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C G T A C T G A C T G A C G T C G T A C G T A A C T G
p-value:1e-5
log p-value:-1.289e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif6.12%
Number of Background Sequences with motif21.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets356.0 +/- 188.6bp
Average Position of motif in Background433.1 +/- 170.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTTACCATGA
NNACTTACCTN--
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTACCATGA
BTVATTWGCATA-
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

ESRRA/MA0592.3/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTTACCATGA--
NNTGACCTTGANN
 A C G T A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T
A G C T C T A G G A C T T C A G G C T A G T A C G T A C A G C T G A C T A T C G C T G A T C A G G T A C

NFAT5/MA0606.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTACCATGA
ATTTTCCATT-
 A C G T A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T

RBPJ/MA1116.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTACCATGA
NNTTCCCANN-
 A C G T A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A
A T G C A C G T C A G T G C A T T G A C T G A C A G T C C T G A A T C G T C A G A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTTACCATGA-
-TGACCTTGAV
 A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTACCATGA----
GCTGACCTTGAACTN
 A C G T A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTTACCATGA
NATGACCTTGA
 A C G T A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTTACCATGA-----
-TTGCCATGGCAACC
 A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTTACCATGA--
----NCGTGACN
 A G T C A C G T A C G T C G T A A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T