Information for 5-CACTTTTAAA (Motif 5)

T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A
Reverse Opposite:
A C G T A C G T A C G T T G C A G T C A C G T A C G T A T A C G C G A T A T C G
p-value:1e-5
log p-value:-1.361e+01
Information Content per bp:1.833
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif22.00%
Number of Background Sequences with motif1478.2
Percentage of Background Sequences with motif3.56%
Average Position of motif in Targets470.0 +/- 262.9bp
Average Position of motif in Background452.0 +/- 257.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CACTTTTAAA
CGGTTTCAAA
 T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CACTTTTAAA---
-CCTTTTATAGNC
 T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A A C G T A C G T A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CACTTTTAAA-----
GACTTTTAWTTTGAA
 T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A A C G T A C G T A C G T A C G T A C G T
C T A G C T G A A G T C G A C T G A C T G A C T A C G T C T G A G C A T C A G T G A C T C G A T T C A G C T G A G T C A

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CACTTTTAAA--
---ATTTGAATT
 T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

TCF7/MA0769.2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACTTTTAAA-
TCCTTTGATGT
 T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A A C G T
A C G T A G T C T G A C G C A T C G A T C G A T A C T G C G T A C G A T T A C G G C A T

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CACTTTTAAA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CACTTTTAAA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACTTTTAAA
ACCACTTGAA--
 A C G T A C G T T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CACTTTTAAA-
-CCTTTGATST
 T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A A C G T
A C G T A T G C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CACTTTTAAA-
-CCTTTGATGT
 T A G C G C T A A T G C A C G T A C G T A C G T A C G T C G T A G T C A T G C A A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T