Information for 3-GCATGCCTAG (Motif 3)

A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G
Reverse Opposite:
A G T C A C G T C G T A A C T G A C T G A G T C C T G A A G C T A C T G A T G C
p-value:1e-6
log p-value:-1.462e+01
Information Content per bp:1.860
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.00%
Number of Background Sequences with motif796.8
Percentage of Background Sequences with motif1.92%
Average Position of motif in Targets627.2 +/- 284.5bp
Average Position of motif in Background601.8 +/- 331.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----GCATGCCTAG-
NNGGCCACGCCTTTN
 A C G T A C G T A C G T A C G T A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCATGCCTAG
--AGGCCTNG
 A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCATGCCTAG
--AGGCCTAG
 A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G
A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCATGCCTAG-----
-CAGGCCNNGGCCNN
 A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCATGCCTAG
AGCGCGCC---
 A C G T A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCCTAG
NNACTTGCCTT-
 A C G T A C G T A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

TEAD3/MA0808.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCATGCCTAG
ACATTCCA--
 A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G
C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A A C G T A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCATGCCTAG
RCATTCCWGG
 A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G
C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCATGCCTAG----
ACATGCCCGGGCAT
 A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G A C G T A C G T A C G T A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCATGCCTAG
-CACGCA---
 A T C G A G T C C T G A A G C T A C T G A G T C A G T C A C G T G T C A C T A G
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T