Information for 1-TTTAGTTACA (Motif 1)

A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A
Reverse Opposite:
A C G T A C T G A G C T C G T A G C T A A G T C C G A T T G C A C G T A C G T A
p-value:1e-8
log p-value:-1.934e+01
Information Content per bp:1.861
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif16.33%
Number of Background Sequences with motif318.2
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets260.3 +/- 176.4bp
Average Position of motif in Background444.4 +/- 258.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTTAGTTACA--
-NTTGATACATT
 A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A A C G T A C G T
A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

DMRTA2/MA1478.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTTAGTTACA--
AATTGTTACATT
 A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A A C G T A C G T
G C T A C G T A G C A T A G C T A C T G G C A T G C A T C T G A A G T C C G T A C G A T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTTAGTTACA
ACTAGTTAAC
 A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0167.1_Tcf1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTAGTTACA-----
NTTTTAGTTAACNNAGN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A A C G T A C G T A C G T A C G T A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

LMX1B/MA0703.2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTAGTTACA
ATTTTAATTAA-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A
C T G A C G A T C G A T A G C T A C G T C G T A C G T A A C G T A C G T G T C A G T C A A C G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTAGTTACA----
NNNTTTGTTTACTTTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A A C G T A C G T A C G T A C G T
T A C G G A C T A T G C C G A T C G A T C G A T C T A G C G A T C A G T C A G T C T G A A G T C G C A T G C A T C G A T C G A T C G A T

DMRTC2/MA1479.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTTAGTTACA--
AATTGATACATT
 A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A A C G T A C G T
G C T A C G T A G C A T A C G T A T C G G T C A G C A T G T C A A T G C C G T A G C A T C A G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTTAGTTACA--
TACCCTAGTTACCGA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PKNOX1/MA0782.2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTTAGTTACA----
TTTGAGTGACAGCTA
 A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A A C G T A C G T A C G T A C G T
C G A T G C A T C G A T T C A G C T G A A C T G C G A T A T C G C T G A G A T C C G T A A C T G T A G C A G C T C T G A

PB0081.1_Tcf1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTTAGTTACA-----
NNNTTAGTTAACTNANN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C G T C T G A G T A C C G T A A C G T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T