Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 48)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44082)	% of Background Sequences with Motif
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-4.852e+00	1.0000	17.0	35.42%	8662.2	19.65%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-2	-4.825e+00	1.0000	45.0	93.75%	35287.2	80.03%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-4.708e+00	1.0000	6.0	12.50%	1658.4	3.76%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-4.617e+00	1.0000	18.0	37.50%	9624.5	21.83%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.742e+00	1.0000	4.0	8.33%	1003.0	2.27%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.584e+00	1.0000	2.0	4.17%	236.5	0.54%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-3.362e+00	1.0000	7.0	14.58%	2866.8	6.50%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-3.266e+00	1.0000	9.0	18.75%	4252.5	9.64%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.010e+00	1.0000	23.0	47.92%	15579.6	35.33%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.901e+00	1.0000	18.0	37.50%	11507.6	26.10%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.765e+00	1.0000	22.0	45.83%	15074.9	34.19%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.759e+00	1.0000	12.0	25.00%	6909.7	15.67%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.738e+00	1.0000	7.0	14.58%	3295.4	7.47%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.615e+00	1.0000	5.0	10.42%	2064.1	4.68%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-2.544e+00	1.0000	35.0	72.92%	27364.9	62.06%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e-1	-2.536e+00	1.0000	20.0	41.67%	13707.8	31.09%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.513e+00	1.0000	4.0	8.33%	1505.7	3.41%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-2.510e+00	1.0000	29.0	60.42%	21737.7	49.30%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.478e+00	1.0000	8.0	16.67%	4217.4	9.57%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.435e+00	1.0000	17.0	35.42%	11331.1	25.70%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.424e+00	1.0000	8.0	16.67%	4268.8	9.68%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.320e+00	1.0000	21.0	43.75%	14912.5	33.82%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-2.308e+00	1.0000	11.0	22.92%	6660.8	15.11%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.262e+00	1.0000	14.0	29.17%	9113.3	20.67%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.258e+00	1.0000	11.0	22.92%	6721.7	15.24%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.242e+00	1.0000	10.0	20.83%	5963.9	13.53%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.010e+00	1.0000	28.0	58.33%	21734.1	49.29%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.002e+00	1.0000	11.0	22.92%	7056.7	16.00%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.959e+00	1.0000	13.0	27.08%	8742.4	19.83%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.907e+00	1.0000	7.0	14.58%	4054.4	9.20%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.903e+00	1.0000	7.0	14.58%	4059.3	9.21%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.868e+00	1.0000	4.0	8.33%	1913.3	4.34%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.829e+00	1.0000	24.0	50.00%	18470.3	41.89%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.785e+00	1.0000	3.0	6.25%	1298.3	2.94%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.782e+00	1.0000	1.0	2.08%	168.8	0.38%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.751e+00	1.0000	21.0	43.75%	15958.9	36.20%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.720e+00	1.0000	3.0	6.25%	1340.9	3.04%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.720e+00	1.0000	3.0	6.25%	1340.9	3.04%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.705e+00	1.0000	6.0	12.50%	3519.5	7.98%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.688e+00	1.0000	14.0	29.17%	10025.9	22.74%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.629e+00	1.0000	5.0	10.42%	2844.2	6.45%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.628e+00	1.0000	11.0	22.92%	7618.4	17.28%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.599e+00	1.0000	8.0	16.67%	5216.6	11.83%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.560e+00	1.0000	6.0	12.50%	3686.3	8.36%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.532e+00	1.0000	13.0	27.08%	9464.6	21.47%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.518e+00	1.0000	15.0	31.25%	11202.9	25.41%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.495e+00	1.0000	13.0	27.08%	9535.0	21.63%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.480e+00	1.0000	6.0	12.50%	3785.2	8.58%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.446e+00	1.0000	11.0	22.92%	7931.5	17.99%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.424e+00	1.0000	6.0	12.50%	3859.0	8.75%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.405e+00	1.0000	21.0	43.75%	16719.6	37.92%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.402e+00	1.0000	21.0	43.75%	16727.2	37.94%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.398e+00	1.0000	20.0	41.67%	15844.6	35.94%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.393e+00	1.0000	14.0	29.17%	10595.6	24.03%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.367e+00	1.0000	10.0	20.83%	7233.0	16.40%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.361e+00	1.0000	26.0	54.17%	21341.4	48.40%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.333e+00	1.0000	15.0	31.25%	11591.0	26.29%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.329e+00	1.0000	34.0	70.83%	28836.6	65.40%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.305e+00	1.0000	19.0	39.58%	15178.1	34.42%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.296e+00	1.0000	7.0	14.58%	4852.9	11.01%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.274e+00	1.0000	11.0	22.92%	8259.2	18.73%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.269e+00	1.0000	5.0	10.42%	3262.8	7.40%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.265e+00	1.0000	9.0	18.75%	6576.0	14.91%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.245e+00	1.0000	3.0	6.25%	1718.9	3.90%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.235e+00	1.0000	37.0	77.08%	31909.0	72.37%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.232e+00	1.0000	11.0	22.92%	8345.7	18.93%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.219e+00	1.0000	31.0	64.58%	26315.1	59.68%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.209e+00	1.0000	20.0	41.67%	16312.0	37.00%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.204e+00	1.0000	10.0	20.83%	7544.7	17.11%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.187e+00	1.0000	12.0	25.00%	9306.2	21.11%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.180e+00	1.0000	22.0	45.83%	18189.1	41.25%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.163e+00	1.0000	11.0	22.92%	8491.2	19.26%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.162e+00	1.0000	10.0	20.83%	7629.9	17.30%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.160e+00	1.0000	3.0	6.25%	1804.8	4.09%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.145e+00	1.0000	4.0	8.33%	2617.6	5.94%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.144e+00	1.0000	6.0	12.50%	4265.7	9.67%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.134e+00	1.0000	2.0	4.17%	1060.2	2.40%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.121e+00	1.0000	3.0	6.25%	1845.7	4.19%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.113e+00	1.0000	27.0	56.25%	22921.2	51.99%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.110e+00	1.0000	9.0	18.75%	6875.1	15.59%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.108e+00	1.0000	8.0	16.67%	6022.4	13.66%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.099e+00	1.0000	9.0	18.75%	6898.9	15.65%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.070e+00	1.0000	7.0	14.58%	5239.0	11.88%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.064e+00	1.0000	4.0	8.33%	2724.6	6.18%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-1.058e+00	1.0000	8.0	16.67%	6119.1	13.88%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.050e+00	1.0000	8.0	16.67%	6135.5	13.92%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.036e+00	1.0000	7.0	14.58%	5303.3	12.03%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.034e+00	1.0000	7.0	14.58%	5306.5	12.04%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.032e+00	1.0000	13.0	27.08%	10550.2	23.93%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.025e+00	1.0000	2.0	4.17%	1153.9	2.62%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-9.988e-01	1.0000	27.0	56.25%	23263.4	52.76%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.905e-01	1.0000	2.0	4.17%	1185.6	2.69%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.884e-01	1.0000	2.0	4.17%	1187.7	2.69%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-9.812e-01	1.0000	34.0	70.83%	29770.5	67.52%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-9.786e-01	1.0000	3.0	6.25%	2011.8	4.56%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-9.736e-01	1.0000	8.0	16.67%	6296.1	14.28%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-9.731e-01	1.0000	3.0	6.25%	2018.6	4.58%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-9.709e-01	1.0000	32.0	66.67%	27948.5	63.39%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-9.665e-01	1.0000	21.0	43.75%	17903.2	40.60%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.550e-01	1.0000	3.0	6.25%	2041.1	4.63%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-9.389e-01	1.0000	3.0	6.25%	2062.2	4.68%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.377e-01	1.0000	22.0	45.83%	18900.1	42.87%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.294e-01	1.0000	6.0	12.50%	4646.7	10.54%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-9.192e-01	1.0000	6.0	12.50%	4667.0	10.58%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-9.146e-01	1.0000	1.0	2.08%	467.9	1.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.146e-01	1.0000	1.0	2.08%	467.4	1.06%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-9.103e-01	1.0000	23.0	47.92%	19897.5	45.13%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.076e-01	1.0000	9.0	18.75%	7326.5	16.62%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-9.049e-01	1.0000	7.0	14.58%	5570.6	12.63%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-9.041e-01	1.0000	25.0	52.08%	21739.1	49.30%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.016e-01	1.0000	3.0	6.25%	2112.8	4.79%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.993e-01	1.0000	10.0	20.83%	8233.7	18.67%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.947e-01	1.0000	5.0	10.42%	3843.8	8.72%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-8.679e-01	1.0000	19.0	39.58%	16407.4	37.21%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-8.582e-01	1.0000	1.0	2.08%	503.8	1.14%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-8.564e-01	1.0000	15.0	31.25%	12831.5	29.10%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-8.558e-01	1.0000	2.0	4.17%	1324.4	3.00%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-8.399e-01	1.0000	5.0	10.42%	3948.0	8.95%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.335e-01	1.0000	10.0	20.83%	8407.2	19.07%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-8.304e-01	1.0000	11.0	22.92%	9312.2	21.12%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.169e-01	1.0000	38.0	79.17%	33971.3	77.05%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.136e-01	1.0000	25.0	52.08%	22049.4	50.01%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-8.053e-01	1.0000	10.0	20.83%	8485.9	19.25%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-8.041e-01	1.0000	25.0	52.08%	22083.0	50.08%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-7.857e-01	1.0000	15.0	31.25%	13058.3	29.62%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.842e-01	1.0000	34.0	70.83%	30391.1	68.93%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-7.833e-01	1.0000	11.0	22.92%	9449.1	21.43%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.782e-01	1.0000	21.0	43.75%	18532.9	42.03%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-7.714e-01	1.0000	32.0	66.67%	28601.8	64.87%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.696e-01	1.0000	5.0	10.42%	4090.3	9.28%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-7.684e-01	1.0000	7.0	14.58%	5887.1	13.35%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.634e-01	1.0000	2.0	4.17%	1435.3	3.26%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.602e-01	1.0000	26.0	54.17%	23156.9	52.52%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.428e-01	1.0000	10.0	20.83%	8666.2	19.66%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.383e-01	1.0000	8.0	16.67%	6868.1	15.58%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.376e-01	1.0000	3.0	6.25%	2361.4	5.36%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-7.320e-01	1.0000	38.0	79.17%	34233.2	77.64%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.314e-01	1.0000	21.0	43.75%	18705.3	42.42%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.311e-01	1.0000	3.0	6.25%	2372.8	5.38%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-7.303e-01	1.0000	1.0	2.08%	599.2	1.36%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.235e-01	1.0000	8.0	16.67%	6909.2	15.67%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-7.190e-01	1.0000	16.0	33.33%	14197.7	32.20%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-7.168e-01	1.0000	12.0	25.00%	10564.0	23.96%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.082e-01	1.0000	11.0	22.92%	9682.4	21.96%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-7.081e-01	1.0000	2.0	4.17%	1509.5	3.42%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.037e-01	1.0000	1.0	2.08%	622.5	1.41%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.024e-01	1.0000	2.0	4.17%	1517.8	3.44%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.973e-01	1.0000	3.0	6.25%	2431.8	5.52%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.925e-01	1.0000	37.0	77.08%	33449.9	75.86%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.883e-01	1.0000	23.0	47.92%	20696.1	46.94%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-6.781e-01	1.0000	24.0	50.00%	21649.8	49.10%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-6.750e-01	1.0000	37.0	77.08%	33509.4	76.00%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-6.626e-01	1.0000	19.0	39.58%	17148.1	38.89%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.623e-01	1.0000	15.0	31.25%	13494.2	30.61%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-6.622e-01	1.0000	9.0	18.75%	8003.1	18.15%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-6.607e-01	1.0000	8.0	16.67%	7091.8	16.08%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.593e-01	1.0000	5.0	10.42%	4341.2	9.85%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.477e-01	1.0000	28.0	58.33%	25420.4	57.65%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.349e-01	1.0000	12.0	25.00%	10848.8	24.61%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.348e-01	1.0000	11.0	22.92%	9930.1	22.52%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.333e-01	1.0000	8.0	16.67%	7176.0	16.28%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.246e-01	1.0000	11.0	22.92%	9966.2	22.60%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.246e-01	1.0000	7.0	14.58%	6279.9	14.24%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.211e-01	1.0000	24.0	50.00%	21886.3	49.64%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.087e-01	1.0000	1.0	2.08%	715.1	1.62%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.056e-01	1.0000	2.0	4.17%	1665.6	3.78%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.015e-01	1.0000	23.0	47.92%	21058.6	47.76%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-5.950e-01	1.0000	1.0	2.08%	730.5	1.66%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-5.861e-01	1.0000	1.0	2.08%	740.6	1.68%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.843e-01	1.0000	1.0	2.08%	742.0	1.68%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.830e-01	1.0000	7.0	14.58%	6407.3	14.53%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-5.804e-01	1.0000	11.0	22.92%	10129.9	22.97%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-5.621e-01	1.0000	28.0	58.33%	25789.5	58.49%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-5.597e-01	1.0000	10.0	20.83%	9280.6	21.05%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-5.524e-01	1.0000	2.0	4.17%	1758.4	3.99%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.501e-01	1.0000	3.0	6.25%	2727.5	6.19%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-5.434e-01	1.0000	27.0	56.25%	24966.2	56.62%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.403e-01	1.0000	16.0	33.33%	14914.2	33.83%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-5.366e-01	1.0000	17.0	35.42%	15852.7	35.95%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-5.360e-01	1.0000	8.0	16.67%	7501.6	17.01%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.356e-01	1.0000	5.0	10.42%	4673.6	10.60%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-5.307e-01	1.0000	6.0	12.50%	5636.8	12.78%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.304e-01	1.0000	6.0	12.50%	5637.2	12.79%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.291e-01	1.0000	1.0	2.08%	809.7	1.84%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.205e-01	1.0000	24.0	50.00%	22344.3	50.68%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-5.196e-01	1.0000	11.0	22.92%	10370.5	23.52%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-5.169e-01	1.0000	5.0	10.42%	4729.8	10.73%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-5.162e-01	1.0000	16.0	33.33%	15024.7	34.08%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-5.057e-01	1.0000	3.0	6.25%	2832.7	6.42%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.029e-01	1.0000	1.0	2.08%	844.2	1.91%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.014e-01	1.0000	24.0	50.00%	22438.0	50.89%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-4.991e-01	1.0000	15.0	31.25%	14179.6	32.16%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.957e-01	1.0000	1.0	2.08%	854.1	1.94%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.957e-01	1.0000	1.0	2.08%	854.1	1.94%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.952e-01	1.0000	8.0	16.67%	7653.3	17.36%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.950e-01	1.0000	1.0	2.08%	855.7	1.94%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-4.895e-01	1.0000	21.0	43.75%	19755.4	44.81%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-4.855e-01	1.0000	12.0	25.00%	11451.3	25.97%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-4.782e-01	1.0000	6.0	12.50%	5813.8	13.19%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-4.782e-01	1.0000	26.0	54.17%	24376.9	55.29%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.710e-01	1.0000	19.0	39.58%	18012.2	40.85%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.693e-01	1.0000	6.0	12.50%	5845.9	13.26%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-4.690e-01	1.0000	21.0	43.75%	19860.4	45.04%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.639e-01	1.0000	7.0	14.58%	6823.2	15.48%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.633e-01	1.0000	5.0	10.42%	4901.9	11.12%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.590e-01	1.0000	13.0	27.08%	12509.9	28.37%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-4.570e-01	1.0000	7.0	14.58%	6850.2	15.54%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-4.552e-01	1.0000	16.0	33.33%	15321.1	34.75%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.501e-01	1.0000	2.0	4.17%	1967.1	4.46%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.483e-01	1.0000	3.0	6.25%	2982.7	6.76%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.479e-01	1.0000	2.0	4.17%	1972.5	4.47%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-4.471e-01	1.0000	18.0	37.50%	17215.2	39.04%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.446e-01	1.0000	10.0	20.83%	9757.7	22.13%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.255e-01	1.0000	6.0	12.50%	6009.3	13.63%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.241e-01	1.0000	20.0	41.67%	19184.7	43.51%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-4.232e-01	1.0000	17.0	35.42%	16418.8	37.24%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.195e-01	1.0000	10.0	20.83%	9874.5	22.40%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.163e-01	1.0000	5.0	10.42%	5067.6	11.49%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-4.029e-01	1.0000	2.0	4.17%	2081.5	4.72%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.027e-01	1.0000	27.0	56.25%	25691.8	58.27%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-4.019e-01	1.0000	11.0	22.92%	10910.6	24.75%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.994e-01	1.0000	2.0	4.17%	2090.9	4.74%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-3.949e-01	1.0000	15.0	31.25%	14713.8	33.37%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-3.909e-01	1.0000	13.0	27.08%	12859.5	29.17%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-3.856e-01	1.0000	16.0	33.33%	15700.9	35.61%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.853e-01	1.0000	5.0	10.42%	5186.2	11.76%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.825e-01	1.0000	8.0	16.67%	8135.2	18.45%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-3.817e-01	1.0000	20.0	41.67%	19430.4	44.07%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.803e-01	1.0000	24.0	50.00%	23102.3	52.40%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.713e-01	1.0000	22.0	45.83%	21331.6	48.38%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.679e-01	1.0000	4.0	8.33%	4251.1	9.64%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.605e-01	1.0000	3.0	6.25%	3252.7	7.38%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-3.585e-01	1.0000	39.0	81.25%	36538.4	82.87%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.552e-01	1.0000	6.0	12.50%	6307.5	14.31%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-3.515e-01	1.0000	14.0	29.17%	14028.3	31.82%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.490e-01	1.0000	3.0	6.25%	3292.6	7.47%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.478e-01	1.0000	22.0	45.83%	21480.3	48.72%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.458e-01	1.0000	1.0	2.08%	1115.8	2.53%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-3.409e-01	1.0000	21.0	43.75%	20608.7	46.74%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.367e-01	1.0000	15.0	31.25%	15062.0	34.16%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.334e-01	1.0000	2.0	4.17%	2277.6	5.17%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.327e-01	1.0000	6.0	12.50%	6413.1	14.55%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.305e-01	1.0000	1.0	2.08%	1149.8	2.61%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.293e-01	1.0000	4.0	8.33%	4405.2	9.99%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.260e-01	1.0000	5.0	10.42%	5440.2	12.34%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.255e-01	1.0000	30.0	62.50%	28852.6	65.44%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.243e-01	1.0000	5.0	10.42%	5448.0	12.36%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-3.209e-01	1.0000	34.0	70.83%	32409.7	73.51%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.202e-01	1.0000	23.0	47.92%	22579.1	51.21%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.183e-01	1.0000	2.0	4.17%	2325.9	5.28%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.180e-01	1.0000	10.0	20.83%	10416.3	23.62%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.176e-01	1.0000	15.0	31.25%	15186.6	34.44%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.143e-01	1.0000	2.0	4.17%	2338.9	5.30%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-3.114e-01	1.0000	18.0	37.50%	18035.9	40.91%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-3.113e-01	1.0000	11.0	22.92%	11422.8	25.91%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.078e-01	1.0000	8.0	16.67%	8526.6	19.34%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.072e-01	1.0000	3.0	6.25%	3449.6	7.82%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.070e-01	1.0000	3.0	6.25%	3450.1	7.82%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-3.046e-01	1.0000	27.0	56.25%	26310.9	59.67%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-3.028e-01	1.0000	9.0	18.75%	9536.6	21.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.010e-01	1.0000	7.0	14.58%	7575.9	17.18%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.983e-01	1.0000	1.0	2.08%	1227.1	2.78%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.940e-01	1.0000	16.0	33.33%	16289.1	36.94%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.898e-01	1.0000	20.0	41.67%	20044.9	45.46%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.829e-01	1.0000	11.0	22.92%	11607.0	26.32%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.808e-01	1.0000	30.0	62.50%	29154.2	66.12%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.764e-01	1.0000	6.0	12.50%	6709.0	15.22%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.733e-01	1.0000	21.0	43.75%	21092.0	47.84%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.662e-01	1.0000	1.0	2.08%	1315.7	2.98%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-2.661e-01	1.0000	10.0	20.83%	10752.0	24.39%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.599e-01	1.0000	17.0	35.42%	17485.4	39.66%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.576e-01	1.0000	6.0	12.50%	6820.1	15.47%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.560e-01	1.0000	3.0	6.25%	3672.5	8.33%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.558e-01	1.0000	1.0	2.08%	1346.5	3.05%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.537e-01	1.0000	24.0	50.00%	23987.2	54.40%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.494e-01	1.0000	13.0	27.08%	13778.8	31.25%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.492e-01	1.0000	6.0	12.50%	6872.1	15.59%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.489e-01	1.0000	17.0	35.42%	17574.0	39.86%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-2.485e-01	1.0000	2.0	4.17%	2582.7	5.86%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.431e-01	1.0000	1.0	2.08%	1386.9	3.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.368e-01	1.0000	2.0	4.17%	2632.3	5.97%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-2.363e-01	1.0000	15.0	31.25%	15792.8	35.82%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.330e-01	1.0000	4.0	8.33%	4877.0	11.06%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.264e-01	1.0000	11.0	22.92%	12026.4	27.28%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.260e-01	1.0000	10.0	20.83%	11049.2	25.06%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-2.236e-01	1.0000	21.0	43.75%	21507.3	48.78%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.216e-01	1.0000	6.0	12.50%	7053.2	16.00%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.215e-01	1.0000	8.0	16.67%	9093.1	20.62%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.102e-01	1.0000	2.0	4.17%	2756.7	6.25%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.080e-01	1.0000	10.0	20.83%	11197.4	25.40%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.073e-01	1.0000	11.0	22.92%	12188.2	27.64%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.059e-01	1.0000	10.0	20.83%	11215.5	25.44%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.058e-01	1.0000	12.0	25.00%	13177.6	29.89%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.058e-01	1.0000	14.0	29.17%	15108.2	34.27%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.007e-01	1.0000	15.0	31.25%	16112.5	36.54%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.986e-01	1.0000	3.0	6.25%	3978.3	9.02%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.980e-01	1.0000	8.0	16.67%	9280.2	21.05%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.978e-01	1.0000	11.0	22.92%	12272.7	27.83%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.965e-01	1.0000	2.0	4.17%	2826.1	6.41%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.929e-01	1.0000	3.0	6.25%	4013.2	9.10%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.907e-01	1.0000	5.0	10.42%	6225.2	14.12%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.868e-01	1.0000	15.0	31.25%	16249.5	36.85%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.858e-01	1.0000	9.0	18.75%	10396.3	23.58%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.854e-01	1.0000	2.0	4.17%	2886.9	6.55%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.853e-01	1.0000	6.0	12.50%	7325.2	16.61%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.821e-01	1.0000	12.0	25.00%	13401.7	30.40%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.802e-01	1.0000	6.0	12.50%	7367.0	16.71%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.714e-01	1.0000	12.0	25.00%	13510.4	30.64%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.666e-01	1.0000	3.0	6.25%	4188.5	9.50%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.657e-01	1.0000	21.0	43.75%	22093.5	50.11%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.566e-01	1.0000	1.0	2.08%	1739.5	3.95%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.547e-01	1.0000	11.0	22.92%	12706.0	28.82%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.504e-01	1.0000	1.0	2.08%	1772.0	4.02%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.473e-01	1.0000	19.0	39.58%	20464.3	46.41%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.430e-01	1.0000	3.0	6.25%	4368.1	9.91%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.429e-01	1.0000	5.0	10.42%	6628.7	15.03%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.415e-01	1.0000	9.0	18.75%	10847.4	24.60%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.414e-01	1.0000	20.0	41.67%	21466.6	48.69%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.403e-01	1.0000	28.0	58.33%	28677.9	65.04%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.391e-01	1.0000	9.0	18.75%	10875.5	24.67%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.369e-01	1.0000	1.0	2.08%	1849.7	4.20%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.313e-01	1.0000	1.0	2.08%	1883.3	4.27%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.246e-01	1.0000	2.0	4.17%	3296.8	7.48%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.241e-01	1.0000	2.0	4.17%	3300.2	7.48%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-1.239e-01	1.0000	2.0	4.17%	3302.6	7.49%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.220e-01	1.0000	19.0	39.58%	20804.3	47.18%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.214e-01	1.0000	1.0	2.08%	1948.1	4.42%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.210e-01	1.0000	34.0	70.83%	34024.0	77.17%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.196e-01	1.0000	5.0	10.42%	6872.0	15.59%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.185e-01	1.0000	8.0	16.67%	10097.0	22.90%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-1.105e-01	1.0000	15.0	31.25%	17194.2	39.00%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.094e-01	1.0000	6.0	12.50%	8091.9	18.35%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.069e-01	1.0000	1.0	2.08%	2053.1	4.66%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-1.035e-01	1.0000	16.0	33.33%	18264.4	41.42%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-9.892e-02	1.0000	15.0	31.25%	17382.8	39.42%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.813e-02	1.0000	6.0	12.50%	8243.1	18.70%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-9.793e-02	1.0000	2.0	4.17%	3542.7	8.03%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-9.608e-02	1.0000	1.0	2.08%	2142.9	4.86%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-9.534e-02	1.0000	11.0	22.92%	13508.8	30.64%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.321e-02	1.0000	7.0	14.58%	9398.3	21.32%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.310e-02	1.0000	4.0	8.33%	6059.5	13.74%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.236e-02	1.0000	10.0	20.83%	12545.7	28.45%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-8.475e-02	1.0000	7.0	14.58%	9534.9	21.63%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-8.067e-02	1.0000	1.0	2.08%	2288.8	5.19%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-7.901e-02	1.0000	16.0	33.33%	18713.9	42.44%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.844e-02	1.0000	2.0	4.17%	3767.6	8.55%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-7.636e-02	1.0000	14.0	29.17%	16836.9	38.19%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.967e-02	1.0000	15.0	31.25%	17953.4	40.72%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.883e-02	1.0000	1.0	2.08%	2421.5	5.49%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.826e-02	1.0000	1.0	2.08%	2428.2	5.51%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.737e-02	1.0000	1.0	2.08%	2439.2	5.53%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.685e-02	1.0000	12.0	25.00%	15067.2	34.17%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.611e-02	1.0000	2.0	4.17%	3939.2	8.93%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-6.560e-02	1.0000	3.0	6.25%	5259.2	11.93%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.409e-02	1.0000	3.0	6.25%	5285.1	11.99%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.216e-02	1.0000	4.0	8.33%	6550.5	14.86%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.783e-02	1.0000	4.0	8.33%	6636.7	15.05%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.088e-02	1.0000	4.0	8.33%	6787.7	15.39%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-5.047e-02	1.0000	2.0	4.17%	4208.5	9.55%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-4.988e-02	1.0000	11.0	22.92%	14492.6	32.87%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.974e-02	1.0000	17.0	35.42%	20387.2	46.24%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-4.968e-02	1.0000	17.0	35.42%	20389.4	46.24%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-4.826e-02	1.0000	14.0	29.17%	17541.0	39.78%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.816e-02	1.0000	8.0	16.67%	11399.6	25.85%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.764e-02	1.0000	6.0	12.50%	9207.7	20.88%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.604e-02	1.0000	2.0	4.17%	4299.3	9.75%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.365e-02	1.0000	1.0	2.08%	2804.4	6.36%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-4.147e-02	1.0000	3.0	6.25%	5762.8	13.07%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.105e-02	1.0000	14.0	29.17%	17778.6	40.32%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.084e-02	1.0000	1.0	2.08%	2860.4	6.49%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.018e-02	1.0000	10.0	20.83%	13767.2	31.22%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.861e-02	1.0000	2.0	4.17%	4472.9	10.14%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.451e-02	1.0000	2.0	4.17%	4582.1	10.39%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.353e-02	1.0000	2.0	4.17%	4610.2	10.46%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.922e-02	1.0000	5.0	10.42%	8645.6	19.61%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.882e-02	1.0000	23.0	47.92%	26654.5	60.45%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.794e-02	1.0000	3.0	6.25%	6183.4	14.02%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.719e-02	1.0000	7.0	14.58%	11045.5	25.05%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.639e-02	1.0000	7.0	14.58%	11082.8	25.14%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.612e-02	1.0000	5.0	10.42%	8776.5	19.91%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.542e-02	1.0000	10.0	20.83%	14384.5	32.62%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.342e-02	1.0000	4.0	8.33%	7670.9	17.40%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.308e-02	1.0000	6.0	12.50%	10103.4	22.91%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-2.277e-02	1.0000	5.0	10.42%	8935.4	20.27%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.034e-02	1.0000	25.0	52.08%	28831.2	65.39%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.947e-02	1.0000	4.0	8.33%	7872.1	17.85%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.629e-02	1.0000	13.0	27.08%	18037.9	40.91%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.513e-02	1.0000	8.0	16.67%	12878.3	29.21%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.462e-02	1.0000	2.0	4.17%	5404.7	12.26%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.397e-02	1.0000	2.0	4.17%	5448.0	12.36%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.157e-02	1.0000	1.0	2.08%	3918.0	8.89%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-8.610e-03	1.0000	4.0	8.33%	8735.7	19.81%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-8.386e-03	1.0000	1.0	2.08%	4185.1	9.49%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-6.178e-03	1.0000	3.0	6.25%	7702.0	17.47%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.817e-03	1.0000	1.0	2.08%	4642.0	10.53%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.979e-03	1.0000	7.0	14.58%	13239.0	30.03%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.763e-03	1.0000	22.0	45.83%	28101.9	63.74%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.483e-03	1.0000	2.0	4.17%	7458.8	16.92%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.600e-04	1.0000	2.0	4.17%	8443.4	19.15%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-0.000e+00	1.0000	0.0	0.00%	127.2	0.29%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-0.000e+00	1.0000	0.0	0.00%	185.9	0.42%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	164.1	0.37%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	0.0	0.00%	581.0	1.32%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	0.000e+00	1.0000	0.0	0.00%	1730.3	3.92%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	666.1	1.51%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	275.5	0.62%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	556.9	1.26%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	683.0	1.55%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	450.8	1.02%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	0.000e+00	1.0000	0.0	0.00%	1605.0	3.64%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	44.4	0.10%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	1186.9	2.69%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	620.9	1.41%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	238.6	0.54%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	591.3	1.34%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	1562.0	3.54%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	0.000e+00	1.0000	0.0	0.00%	1737.8	3.94%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	519.5	1.18%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	4215.5	9.56%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	197.6	0.45%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	172.8	0.39%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	0.000e+00	1.0000	0.0	0.00%	1620.3	3.67%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	30.1	0.07%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	0.000e+00	1.0000	0.0	0.00%	1014.1	2.30%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	0.000e+00	1.0000	0.0	0.00%	5056.1	11.47%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	739.2	1.68%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	1707.2	3.87%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	656.5	1.49%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	208.6	0.47%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	93.9	0.21%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	371.7	0.84%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	192.9	0.44%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	401.7	0.91%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	462.8	1.05%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	0.000e+00	1.0000	0.0	0.00%	1724.5	3.91%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	0.000e+00	1.0000	0.0	0.00%	1443.2	3.27%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	0.000e+00	1.0000	0.0	0.00%	2306.1	5.23%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	13.9	0.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	0.000e+00	1.0000	0.0	0.00%	1514.3	3.43%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	498.7	1.13%