Information for 5-CCAAATATTC (Motif 5)

G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C
Reverse Opposite:
C A T G G T C A T C G A A G C T G C T A A G C T A C G T A G C T C T A G C T A G
p-value:1e-4
log p-value:-1.139e+01
Information Content per bp:1.663
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif27.08%
Number of Background Sequences with motif2947.8
Percentage of Background Sequences with motif6.69%
Average Position of motif in Targets476.8 +/- 293.2bp
Average Position of motif in Background479.8 +/- 280.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CCAAATATTC-----
-CTAATATTGCTAAA
 G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CCAAATATTC-----
-CTAATATTGCTAAA
 G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCAAATATTC--
--GAATATTCAT
 G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C A C G T A C G T
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCAAATATTC
--AATTATT-
 G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C
A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCAAATATTC--
--GHATATKCAT
 G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C A C G T A C G T
A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Foxd3/MA0041.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCAAATATTC
AAACAAACATTC
 A C G T A C G T G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

ZBTB18/MA0698.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCAAATATTC
CATCCAGATGTTC
 A C G T A C G T A C G T G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C
G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCAAATATTC
TCCAGATGTT-
 A C G T G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C
A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T A C G T

TEAD2/MA1121.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCAAATATTC-----
--TCACATTCCAGCC
 G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G A T C T C G A T G A C C T G A A G C T C G A T A G T C G A T C G C T A C A T G A T G C T A G C

LHX2/MA0700.2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAAATATTC
AACCAATTAAT-
 A C G T A C G T G A T C A G T C T C G A T G C A T C G A C G A T T C G A A G C T C A G T G T A C
C G T A C G T A A T G C G A T C G C T A G C T A C G A T C G A T G C T A C G T A G C A T A C G T