Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 46)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 42519)	% of Background Sequences with Motif
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-3	-7.083e+00	0.3694	28.0	60.87%	15706.4	36.94%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-4.936e+00	1.0000	25.0	54.35%	15140.4	35.61%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-4.487e+00	1.0000	10.0	21.74%	4109.0	9.66%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-4.082e+00	1.0000	28.0	60.87%	18784.2	44.18%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-3.987e+00	1.0000	30.0	65.22%	20759.1	48.82%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-3.965e+00	1.0000	14.0	30.43%	7286.3	17.14%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.922e+00	1.0000	3.0	6.52%	529.3	1.24%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-3.914e+00	1.0000	28.0	60.87%	18996.9	44.68%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.774e+00	1.0000	32.0	69.57%	22947.6	53.97%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.530e+00	1.0000	26.0	56.52%	17684.9	41.59%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-3.473e+00	1.0000	28.0	60.87%	19581.5	46.05%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-3.472e+00	1.0000	6.0	13.04%	2208.8	5.19%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.949e+00	1.0000	15.0	32.61%	9106.1	21.42%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.888e+00	1.0000	11.0	23.91%	6069.5	14.27%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-2.877e+00	1.0000	28.0	60.87%	20450.8	48.10%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-2.820e+00	1.0000	8.0	17.39%	3948.5	9.29%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-2.814e+00	1.0000	11.0	23.91%	6144.1	14.45%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-1	-2.811e+00	1.0000	2.0	4.35%	366.8	0.86%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.793e+00	1.0000	30.0	65.22%	22455.4	52.81%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-2.772e+00	1.0000	26.0	56.52%	18779.6	44.17%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.741e+00	1.0000	8.0	17.39%	4014.9	9.44%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-2.687e+00	1.0000	14.0	30.43%	8624.0	20.28%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.654e+00	1.0000	12.0	26.09%	7085.3	16.66%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.602e+00	1.0000	9.0	19.57%	4864.6	11.44%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.561e+00	1.0000	2.0	4.35%	424.0	1.00%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.508e+00	1.0000	18.0	39.13%	12166.3	28.61%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-2.462e+00	1.0000	13.0	28.26%	8106.6	19.07%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.445e+00	1.0000	17.0	36.96%	11416.2	26.85%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.395e+00	1.0000	26.0	56.52%	19399.1	45.62%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.356e+00	1.0000	11.0	23.91%	6653.4	15.65%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.286e+00	1.0000	12.0	26.09%	7533.9	17.72%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.280e+00	1.0000	3.0	6.52%	1038.1	2.44%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.273e+00	1.0000	3.0	6.52%	1041.9	2.45%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.176e+00	1.0000	7.0	15.22%	3805.4	8.95%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.131e+00	1.0000	2.0	4.35%	547.4	1.29%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.108e+00	1.0000	5.0	10.87%	2433.8	5.72%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.107e+00	1.0000	2.0	4.35%	555.5	1.31%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.043e+00	1.0000	12.0	26.09%	7864.4	18.50%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-2.034e+00	1.0000	22.0	47.83%	16437.1	38.66%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.018e+00	1.0000	5.0	10.87%	2505.9	5.89%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.017e+00	1.0000	22.0	47.83%	16468.8	38.73%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.995e+00	1.0000	7.0	15.22%	3988.0	9.38%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.991e+00	1.0000	10.0	21.74%	6323.8	14.87%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.989e+00	1.0000	4.0	8.70%	1837.1	4.32%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.979e+00	1.0000	14.0	30.43%	9612.0	22.61%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.968e+00	1.0000	1.0	2.17%	138.2	0.32%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.952e+00	1.0000	5.0	10.87%	2561.9	6.03%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.921e+00	1.0000	2.0	4.35%	623.4	1.47%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.866e+00	1.0000	6.0	13.04%	3372.1	7.93%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.837e+00	1.0000	29.0	63.04%	23229.6	54.63%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.831e+00	1.0000	2.0	4.35%	660.8	1.55%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.827e+00	1.0000	14.0	30.43%	9861.7	23.19%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.826e+00	1.0000	4.0	8.70%	1958.1	4.61%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.819e+00	1.0000	2.0	4.35%	665.7	1.57%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.797e+00	1.0000	27.0	58.70%	21449.8	50.45%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.784e+00	1.0000	7.0	15.22%	4223.4	9.93%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.768e+00	1.0000	13.0	28.26%	9116.5	21.44%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.738e+00	1.0000	15.0	32.61%	10866.3	25.56%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.696e+00	1.0000	3.0	6.52%	1365.2	3.21%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.689e+00	1.0000	12.0	26.09%	8409.1	19.78%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-1.660e+00	1.0000	15.0	32.61%	11010.5	25.90%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.652e+00	1.0000	12.0	26.09%	8470.0	19.92%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.640e+00	1.0000	26.0	56.52%	20863.2	49.07%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.584e+00	1.0000	5.0	10.87%	2911.6	6.85%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.547e+00	1.0000	3.0	6.52%	1471.4	3.46%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.519e+00	1.0000	1.0	2.17%	227.0	0.53%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.498e+00	1.0000	28.0	60.87%	23036.6	54.18%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.495e+00	1.0000	15.0	32.61%	11332.7	26.65%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.491e+00	1.0000	6.0	13.04%	3796.7	8.93%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.476e+00	1.0000	6.0	13.04%	3816.8	8.98%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.464e+00	1.0000	3.0	6.52%	1536.1	3.61%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.452e+00	1.0000	9.0	19.57%	6296.2	14.81%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.423e+00	1.0000	10.0	21.74%	7182.7	16.89%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.417e+00	1.0000	20.0	43.48%	15921.2	37.44%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.417e+00	1.0000	17.0	36.96%	13250.6	31.16%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.405e+00	1.0000	24.0	52.17%	19570.6	46.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.403e+00	1.0000	3.0	6.52%	1586.3	3.73%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.401e+00	1.0000	5.0	10.87%	3117.9	7.33%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.364e+00	1.0000	31.0	67.39%	26165.6	61.54%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.340e+00	1.0000	1.0	2.17%	280.0	0.66%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.329e+00	1.0000	13.0	28.26%	9935.0	23.37%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.302e+00	1.0000	21.0	45.65%	17098.8	40.21%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.294e+00	1.0000	22.0	47.83%	18026.5	42.40%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.270e+00	1.0000	8.0	17.39%	5765.5	13.56%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.247e+00	1.0000	3.0	6.52%	1727.7	4.06%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.243e+00	1.0000	4.0	8.70%	2514.1	5.91%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.239e+00	1.0000	3.0	6.52%	1735.2	4.08%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.218e+00	1.0000	31.0	67.39%	26532.1	62.40%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.211e+00	1.0000	17.0	36.96%	13733.4	32.30%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.206e+00	1.0000	6.0	13.04%	4195.5	9.87%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.173e+00	1.0000	7.0	15.22%	5088.1	11.97%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.169e+00	1.0000	10.0	21.74%	7665.2	18.03%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.161e+00	1.0000	16.0	34.78%	12965.2	30.49%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.142e+00	1.0000	32.0	69.57%	27671.3	65.08%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.136e+00	1.0000	4.0	8.70%	2646.1	6.22%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.130e+00	1.0000	22.0	47.83%	18458.9	43.41%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.128e+00	1.0000	27.0	58.70%	23051.4	54.21%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.122e+00	1.0000	2.0	4.35%	1076.5	2.53%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.118e+00	1.0000	6.0	13.04%	4335.4	10.20%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.110e+00	1.0000	6.0	13.04%	4349.8	10.23%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.103e+00	1.0000	8.0	17.39%	6071.0	14.28%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.088e+00	1.0000	15.0	32.61%	12260.9	28.84%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.087e+00	1.0000	6.0	13.04%	4387.5	10.32%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.087e+00	1.0000	5.0	10.87%	3543.0	8.33%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.072e+00	1.0000	24.0	52.17%	20450.1	48.10%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.024e+00	1.0000	10.0	21.74%	7981.5	18.77%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.011e+00	1.0000	7.0	15.22%	5386.0	12.67%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.006e+00	1.0000	1.0	2.17%	418.2	0.98%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.743e-01	1.0000	9.0	19.57%	7215.5	16.97%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-9.725e-01	1.0000	33.0	71.74%	29083.0	68.40%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.683e-01	1.0000	21.0	45.65%	18019.3	42.38%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-9.535e-01	1.0000	17.0	36.96%	14430.6	33.94%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.470e-01	1.0000	3.0	6.52%	2064.5	4.86%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-9.384e-01	1.0000	17.0	36.96%	14475.2	34.04%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-9.343e-01	1.0000	1.0	2.17%	458.4	1.08%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-9.029e-01	1.0000	19.0	41.30%	16401.8	38.58%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.865e-01	1.0000	2.0	4.35%	1298.1	3.05%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.775e-01	1.0000	20.0	43.48%	17394.9	40.91%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-8.664e-01	1.0000	7.0	15.22%	5691.0	13.38%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.632e-01	1.0000	3.0	6.52%	2179.8	5.13%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-8.563e-01	1.0000	7.0	15.22%	5713.8	13.44%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-8.363e-01	1.0000	7.0	15.22%	5759.0	13.54%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.219e-01	1.0000	3.0	6.52%	2240.4	5.27%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.179e-01	1.0000	2.0	4.35%	1376.2	3.24%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-8.084e-01	1.0000	1.0	2.17%	541.8	1.27%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-8.040e-01	1.0000	14.0	30.43%	12169.8	28.62%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.022e-01	1.0000	2.0	4.35%	1395.5	3.28%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.022e-01	1.0000	2.0	4.35%	1395.5	3.28%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-7.955e-01	1.0000	11.0	23.91%	9471.2	22.28%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.891e-01	1.0000	23.0	50.00%	20442.9	48.08%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-7.887e-01	1.0000	32.0	69.57%	28725.2	67.56%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.832e-01	1.0000	7.0	15.22%	5886.9	13.85%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.763e-01	1.0000	11.0	23.91%	9528.4	22.41%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.719e-01	1.0000	5.0	10.87%	4110.7	9.67%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.674e-01	1.0000	11.0	23.91%	9555.8	22.47%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-7.667e-01	1.0000	36.0	78.26%	32494.9	76.42%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.598e-01	1.0000	10.0	21.74%	8668.8	20.39%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.498e-01	1.0000	8.0	17.39%	6878.5	16.18%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.434e-01	1.0000	19.0	41.30%	16942.8	39.85%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-7.421e-01	1.0000	14.0	30.43%	12373.0	29.10%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.311e-01	1.0000	13.0	28.26%	11495.8	27.04%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.182e-01	1.0000	1.0	2.17%	613.4	1.44%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-7.176e-01	1.0000	12.0	26.09%	10625.2	24.99%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-7.173e-01	1.0000	16.0	34.78%	14289.1	33.61%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.010e-01	1.0000	3.0	6.52%	2439.1	5.74%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.932e-01	1.0000	3.0	6.52%	2453.2	5.77%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-6.914e-01	1.0000	11.0	23.91%	9795.8	23.04%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-6.891e-01	1.0000	5.0	10.87%	4295.2	10.10%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-6.852e-01	1.0000	8.0	17.39%	7060.7	16.61%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-6.829e-01	1.0000	26.0	56.52%	23593.2	55.49%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-6.815e-01	1.0000	13.0	28.26%	11665.7	27.44%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-6.782e-01	1.0000	2.0	4.35%	1561.8	3.67%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.747e-01	1.0000	8.0	17.39%	7091.6	16.68%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-6.723e-01	1.0000	20.0	43.48%	18129.3	42.64%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.591e-01	1.0000	4.0	8.70%	3442.8	8.10%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-6.505e-01	1.0000	8.0	17.39%	7164.2	16.85%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-6.487e-01	1.0000	13.0	28.26%	11783.9	27.71%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-6.460e-01	1.0000	16.0	34.78%	14556.4	34.24%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-6.415e-01	1.0000	10.0	21.74%	9041.2	21.26%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-6.403e-01	1.0000	1.0	2.17%	686.2	1.61%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.397e-01	1.0000	7.0	15.22%	6271.7	14.75%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-6.388e-01	1.0000	38.0	82.61%	34733.7	81.69%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-6.381e-01	1.0000	37.0	80.43%	33826.0	79.55%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-6.355e-01	1.0000	16.0	34.78%	14597.2	34.33%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.174e-01	1.0000	18.0	39.13%	16512.9	38.84%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.089e-01	1.0000	1.0	2.17%	719.3	1.69%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.062e-01	1.0000	3.0	6.52%	2621.6	6.17%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.030e-01	1.0000	4.0	8.70%	3571.2	8.40%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-6.020e-01	1.0000	29.0	63.04%	26668.2	62.72%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.015e-01	1.0000	11.0	23.91%	10108.6	23.77%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-5.975e-01	1.0000	6.0	13.04%	5463.8	12.85%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.872e-01	1.0000	5.0	10.87%	4553.7	10.71%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-5.872e-01	1.0000	5.0	10.87%	4553.3	10.71%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-5.791e-01	1.0000	9.0	19.57%	8328.5	19.59%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-5.785e-01	1.0000	10.0	21.74%	9263.1	21.79%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-5.700e-01	1.0000	1.0	2.17%	763.7	1.80%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.597e-01	1.0000	3.0	6.52%	2721.9	6.40%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.589e-01	1.0000	31.0	67.39%	28672.9	67.44%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-5.478e-01	1.0000	1.0	2.17%	790.3	1.86%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.466e-01	1.0000	7.0	15.22%	6563.7	15.44%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.383e-01	1.0000	3.0	6.52%	2770.8	6.52%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-5.301e-01	1.0000	6.0	13.04%	5670.1	13.34%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.274e-01	1.0000	4.0	8.70%	3764.4	8.85%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.251e-01	1.0000	2.0	4.35%	1820.6	4.28%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.244e-01	1.0000	4.0	8.70%	3772.7	8.87%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.213e-01	1.0000	12.0	26.09%	11357.5	26.71%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-5.134e-01	1.0000	18.0	39.13%	16972.1	39.92%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.119e-01	1.0000	18.0	39.13%	16979.3	39.93%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.109e-01	1.0000	2.0	4.35%	1848.4	4.35%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.082e-01	1.0000	10.0	21.74%	9535.4	22.43%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.064e-01	1.0000	2.0	4.35%	1857.9	4.37%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.977e-01	1.0000	4.0	8.70%	3847.9	9.05%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.946e-01	1.0000	30.0	65.22%	28051.1	65.97%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.938e-01	1.0000	16.0	34.78%	15211.9	35.78%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-4.890e-01	1.0000	7.0	15.22%	6766.4	15.91%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-4.879e-01	1.0000	3.0	6.52%	2894.0	6.81%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-4.861e-01	1.0000	5.0	10.87%	4853.1	11.41%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.776e-01	1.0000	25.0	54.35%	23586.3	55.47%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.722e-01	1.0000	6.0	13.04%	5867.8	13.80%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.709e-01	1.0000	12.0	26.09%	11580.9	27.24%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.679e-01	1.0000	24.0	52.17%	22721.6	53.44%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.594e-01	1.0000	22.0	47.83%	20931.8	49.23%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.577e-01	1.0000	3.0	6.52%	2973.5	6.99%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.537e-01	1.0000	12.0	26.09%	11660.6	27.42%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.521e-01	1.0000	31.0	67.39%	29157.9	68.58%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.503e-01	1.0000	23.0	50.00%	21897.4	51.50%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.500e-01	1.0000	9.0	19.57%	8833.6	20.78%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.461e-01	1.0000	9.0	19.57%	8850.7	20.82%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.444e-01	1.0000	7.0	15.22%	6938.7	16.32%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-4.426e-01	1.0000	7.0	15.22%	6945.3	16.33%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.407e-01	1.0000	8.0	17.39%	7916.2	18.62%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.292e-01	1.0000	20.0	43.48%	19250.3	45.27%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.277e-01	1.0000	7.0	15.22%	7006.6	16.48%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.223e-01	1.0000	2.0	4.35%	2044.4	4.81%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.213e-01	1.0000	18.0	39.13%	17441.4	41.02%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-4.194e-01	1.0000	15.0	32.61%	14653.5	34.46%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.145e-01	1.0000	8.0	17.39%	8030.0	18.89%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.131e-01	1.0000	15.0	32.61%	14687.8	34.54%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.110e-01	1.0000	23.0	50.00%	22112.2	52.01%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-4.057e-01	1.0000	23.0	50.00%	22142.6	52.08%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-4.055e-01	1.0000	7.0	15.22%	7100.6	16.70%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.028e-01	1.0000	4.0	8.70%	4147.2	9.75%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-3.974e-01	1.0000	13.0	28.26%	12889.8	30.32%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.908e-01	1.0000	1.0	2.17%	1030.7	2.42%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.881e-01	1.0000	6.0	13.04%	6195.7	14.57%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.877e-01	1.0000	4.0	8.70%	4201.1	9.88%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.876e-01	1.0000	8.0	17.39%	8154.9	19.18%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.854e-01	1.0000	2.0	4.35%	2139.9	5.03%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-3.841e-01	1.0000	21.0	45.65%	20430.8	48.05%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.839e-01	1.0000	7.0	15.22%	7196.1	16.92%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.792e-01	1.0000	6.0	13.04%	6233.4	14.66%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.775e-01	1.0000	27.0	58.70%	25948.2	61.03%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.756e-01	1.0000	10.0	21.74%	10146.6	23.86%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.718e-01	1.0000	1.0	2.17%	1067.4	2.51%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.688e-01	1.0000	6.0	13.04%	6279.4	14.77%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-3.668e-01	1.0000	1.0	2.17%	1077.1	2.53%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.569e-01	1.0000	9.0	19.57%	9278.8	21.82%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-3.554e-01	1.0000	8.0	17.39%	8312.8	19.55%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.519e-01	1.0000	5.0	10.87%	5353.9	12.59%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.517e-01	1.0000	14.0	30.43%	14095.6	33.15%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.464e-01	1.0000	11.0	23.91%	11267.8	26.50%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.455e-01	1.0000	1.0	2.17%	1122.8	2.64%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-3.436e-01	1.0000	10.0	21.74%	10319.7	24.27%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.378e-01	1.0000	1.0	2.17%	1139.4	2.68%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-3.369e-01	1.0000	11.0	23.91%	11322.3	26.63%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-3.366e-01	1.0000	18.0	39.13%	17946.8	42.21%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.314e-01	1.0000	12.0	26.09%	12315.9	28.97%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.295e-01	1.0000	10.0	21.74%	10400.0	24.46%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.290e-01	1.0000	9.0	19.57%	9430.1	22.18%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.251e-01	1.0000	2.0	4.35%	2316.2	5.45%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.180e-01	1.0000	8.0	17.39%	8511.6	20.02%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-3.168e-01	1.0000	18.0	39.13%	18078.3	42.52%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.168e-01	1.0000	15.0	32.61%	15263.0	35.90%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.133e-01	1.0000	29.0	63.04%	28141.5	66.19%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.080e-01	1.0000	4.0	8.70%	4521.1	10.63%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.046e-01	1.0000	1.0	2.17%	1218.4	2.87%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-3.042e-01	1.0000	6.0	13.04%	6591.4	15.50%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.032e-01	1.0000	21.0	45.65%	20954.1	49.28%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.981e-01	1.0000	7.0	15.22%	7630.7	17.95%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.960e-01	1.0000	9.0	19.57%	9626.0	22.64%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.916e-01	1.0000	3.0	6.52%	3532.2	8.31%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.880e-01	1.0000	10.0	21.74%	10655.7	25.06%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-2.871e-01	1.0000	7.0	15.22%	7693.1	18.09%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.820e-01	1.0000	2.0	4.35%	2464.2	5.80%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.818e-01	1.0000	1.0	2.17%	1278.2	3.01%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-2.778e-01	1.0000	15.0	32.61%	15534.6	36.54%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.775e-01	1.0000	2.0	4.35%	2481.6	5.84%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.764e-01	1.0000	22.0	47.83%	22070.7	51.91%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.746e-01	1.0000	2.0	4.35%	2492.7	5.86%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.715e-01	1.0000	10.0	21.74%	10765.8	25.32%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.701e-01	1.0000	38.0	82.61%	36204.4	85.15%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-2.668e-01	1.0000	18.0	39.13%	18441.1	43.37%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.668e-01	1.0000	2.0	4.35%	2522.7	5.93%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-2.658e-01	1.0000	12.0	26.09%	12751.9	29.99%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.633e-01	1.0000	1.0	2.17%	1331.1	3.13%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.622e-01	1.0000	3.0	6.52%	3662.6	8.61%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.585e-01	1.0000	6.0	13.04%	6849.9	16.11%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.552e-01	1.0000	3.0	6.52%	3695.3	8.69%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.524e-01	1.0000	2.0	4.35%	2580.4	6.07%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.491e-01	1.0000	20.0	43.48%	20443.8	48.08%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.488e-01	1.0000	9.0	19.57%	9937.8	23.37%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.459e-01	1.0000	15.0	32.61%	15780.3	37.11%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.457e-01	1.0000	26.0	56.52%	25942.6	61.01%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-2.394e-01	1.0000	1.0	2.17%	1406.6	3.31%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-2.332e-01	1.0000	12.0	26.09%	13001.2	30.58%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.294e-01	1.0000	7.0	15.22%	8063.4	18.96%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.291e-01	1.0000	18.0	39.13%	18751.4	44.10%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.284e-01	1.0000	26.0	56.52%	26085.1	61.35%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.254e-01	1.0000	28.0	60.87%	27893.6	65.60%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.253e-01	1.0000	9.0	19.57%	10111.2	23.78%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.247e-01	1.0000	13.0	28.26%	14040.1	33.02%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.209e-01	1.0000	6.0	13.04%	7093.3	16.68%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.137e-01	1.0000	15.0	32.61%	16055.1	37.76%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-2.136e-01	1.0000	6.0	13.04%	7144.9	16.80%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-2.112e-01	1.0000	19.0	41.30%	19846.5	46.68%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-2.095e-01	1.0000	1.0	2.17%	1512.7	3.56%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.093e-01	1.0000	1.0	2.17%	1513.0	3.56%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.036e-01	1.0000	9.0	19.57%	10286.6	24.19%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.034e-01	1.0000	1.0	2.17%	1536.8	3.61%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.028e-01	1.0000	4.0	8.70%	5087.6	11.97%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.975e-01	1.0000	4.0	8.70%	5122.1	12.05%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.931e-01	1.0000	4.0	8.70%	5152.1	12.12%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.926e-01	1.0000	12.0	26.09%	13355.7	31.41%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.925e-01	1.0000	4.0	8.70%	5156.3	12.13%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.921e-01	1.0000	9.0	19.57%	10385.5	24.43%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.914e-01	1.0000	18.0	39.13%	19104.2	44.93%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.911e-01	1.0000	5.0	10.87%	6252.1	14.70%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.826e-01	1.0000	21.0	45.65%	21978.1	51.69%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.788e-01	1.0000	1.0	2.17%	1641.0	3.86%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.776e-01	1.0000	11.0	23.91%	12517.6	29.44%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.772e-01	1.0000	5.0	10.87%	6359.8	14.96%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.759e-01	1.0000	3.0	6.52%	4144.5	9.75%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.749e-01	1.0000	9.0	19.57%	10543.9	24.80%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.742e-01	1.0000	3.0	6.52%	4156.9	9.78%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.732e-01	1.0000	30.0	65.22%	30112.3	70.82%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.711e-01	1.0000	14.0	30.43%	15514.3	36.49%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.679e-01	1.0000	2.0	4.35%	3004.2	7.07%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.671e-01	1.0000	8.0	17.39%	9599.4	22.58%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.655e-01	1.0000	4.0	8.70%	5355.6	12.60%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.643e-01	1.0000	7.0	15.22%	8591.6	20.21%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.612e-01	1.0000	4.0	8.70%	5389.7	12.68%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.576e-01	1.0000	24.0	52.17%	24980.0	58.75%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.551e-01	1.0000	1.0	2.17%	1756.6	4.13%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.542e-01	1.0000	4.0	8.70%	5447.5	12.81%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.536e-01	1.0000	1.0	2.17%	1764.9	4.15%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.523e-01	1.0000	6.0	13.04%	7651.2	17.99%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.499e-01	1.0000	5.0	10.87%	6593.4	15.51%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.465e-01	1.0000	1.0	2.17%	1803.9	4.24%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.448e-01	1.0000	9.0	19.57%	10855.0	25.53%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.419e-01	1.0000	1.0	2.17%	1829.6	4.30%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.392e-01	1.0000	1.0	2.17%	1845.1	4.34%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.391e-01	1.0000	3.0	6.52%	4422.8	10.40%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.334e-01	1.0000	1.0	2.17%	1880.6	4.42%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.323e-01	1.0000	4.0	8.70%	5644.2	13.27%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.318e-01	1.0000	32.0	69.57%	32245.4	75.84%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.304e-01	1.0000	2.0	4.35%	3266.1	7.68%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.202e-01	1.0000	15.0	32.61%	17104.8	40.23%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.183e-01	1.0000	11.0	23.91%	13207.7	31.06%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.180e-01	1.0000	21.0	45.65%	22765.7	53.54%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.163e-01	1.0000	9.0	19.57%	11205.3	26.35%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.133e-01	1.0000	18.0	39.13%	20056.9	47.17%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-1.130e-01	1.0000	14.0	30.43%	16243.7	38.20%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.124e-01	1.0000	13.0	28.26%	15275.9	35.93%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-1.107e-01	1.0000	19.0	41.30%	21030.4	49.46%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.092e-01	1.0000	4.0	8.70%	5887.5	13.85%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.014e-01	1.0000	19.0	41.30%	21178.1	49.81%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-9.620e-02	1.0000	9.0	19.57%	11498.1	27.04%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-9.427e-02	1.0000	11.0	23.91%	13573.7	31.92%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.274e-02	1.0000	4.0	8.70%	6091.5	14.33%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.062e-02	1.0000	33.0	71.74%	33584.1	78.99%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.878e-02	1.0000	4.0	8.70%	6145.7	14.45%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-8.820e-02	1.0000	4.0	8.70%	6153.3	14.47%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.748e-02	1.0000	6.0	13.04%	8436.5	19.84%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.724e-02	1.0000	1.0	2.17%	2234.8	5.26%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-8.381e-02	1.0000	14.0	30.43%	16735.8	39.36%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.338e-02	1.0000	18.0	39.13%	20567.8	48.37%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.239e-02	1.0000	1.0	2.17%	2282.8	5.37%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-7.867e-02	1.0000	12.0	26.09%	14861.7	34.95%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-7.792e-02	1.0000	16.0	34.78%	18783.9	44.18%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.375e-02	1.0000	11.0	23.91%	13954.8	32.82%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-6.994e-02	1.0000	4.0	8.70%	6436.5	15.14%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.972e-02	1.0000	6.0	13.04%	8743.7	20.56%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-6.586e-02	1.0000	3.0	6.52%	5278.2	12.41%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.206e-02	1.0000	2.0	4.35%	4021.1	9.46%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.175e-02	1.0000	2.0	4.35%	4026.7	9.47%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.992e-02	1.0000	1.0	2.17%	2550.8	6.00%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.727e-02	1.0000	30.0	65.22%	31714.0	74.59%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.569e-02	1.0000	12.0	26.09%	15385.7	36.19%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-5.331e-02	1.0000	21.0	45.65%	24024.1	56.50%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.119e-02	1.0000	8.0	17.39%	11353.8	26.70%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-4.812e-02	1.0000	4.0	8.70%	6880.9	16.18%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-4.629e-02	1.0000	2.0	4.35%	4313.5	10.14%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.541e-02	1.0000	2.0	4.35%	4333.0	10.19%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-4.195e-02	1.0000	29.0	63.04%	31275.1	73.56%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.172e-02	1.0000	11.0	23.91%	14786.5	34.78%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.824e-02	1.0000	4.0	8.70%	7146.3	16.81%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-3.685e-02	1.0000	7.0	15.22%	10694.1	25.15%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.350e-02	1.0000	3.0	6.52%	6015.1	14.15%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.326e-02	1.0000	5.0	10.87%	8522.7	20.04%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.080e-02	1.0000	6.0	13.04%	9786.8	23.02%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-2.966e-02	1.0000	1.0	2.17%	3144.1	7.39%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.819e-02	1.0000	8.0	17.39%	12141.4	28.56%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.741e-02	1.0000	24.0	52.17%	27583.1	64.87%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-2.695e-02	1.0000	7.0	15.22%	11089.4	26.08%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.478e-02	1.0000	2.0	4.35%	4923.7	11.58%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.356e-02	1.0000	3.0	6.52%	6386.5	15.02%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.076e-02	1.0000	11.0	23.91%	15721.8	36.98%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.723e-02	1.0000	1.0	2.17%	3601.3	8.47%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.719e-02	1.0000	1.0	2.17%	3603.0	8.47%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.689e-02	1.0000	3.0	6.52%	6729.7	15.83%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.625e-02	1.0000	1.0	2.17%	3650.6	8.59%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.560e-02	1.0000	2.0	4.35%	5364.5	12.62%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.432e-02	1.0000	2.0	4.35%	5445.5	12.81%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.414e-02	1.0000	1.0	2.17%	3768.0	8.86%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.201e-02	1.0000	1.0	2.17%	3903.6	9.18%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.765e-03	1.0000	3.0	6.52%	7385.3	17.37%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.148e-03	1.0000	28.0	60.87%	32193.6	75.72%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.046e-03	1.0000	2.0	4.35%	6101.6	14.35%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.452e-03	1.0000	3.0	6.52%	7683.8	18.07%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.139e-03	1.0000	1.0	2.17%	4607.7	10.84%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.175e-03	1.0000	6.0	13.04%	13273.6	31.22%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-0.000e+00	1.0000	0.0	0.00%	1621.2	3.81%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-0.000e+00	1.0000	0.0	0.00%	85.1	0.20%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	0.0	0.00%	31.8	0.07%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-0.000e+00	1.0000	0.0	0.00%	3038.2	7.15%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-0.000e+00	1.0000	0.0	0.00%	445.5	1.05%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-0.000e+00	1.0000	0.0	0.00%	713.3	1.68%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-0.000e+00	1.0000	0.0	0.00%	46.5	0.11%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-0.000e+00	1.0000	0.0	0.00%	1432.9	3.37%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-0.000e+00	1.0000	0.0	0.00%	98.3	0.23%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	824.7	1.94%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	155.4	0.37%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-0.000e+00	1.0000	0.0	0.00%	239.5	0.56%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-0.000e+00	1.0000	0.0	0.00%	2412.8	5.67%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-0.000e+00	1.0000	0.0	0.00%	198.5	0.47%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-0.000e+00	1.0000	0.0	0.00%	182.2	0.43%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1181.7	2.78%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-0.000e+00	1.0000	0.0	0.00%	858.4	2.02%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	0.0	0.00%	457.7	1.08%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-0.000e+00	1.0000	0.0	0.00%	1356.3	3.19%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-0.000e+00	1.0000	0.0	0.00%	414.3	0.97%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-0.000e+00	1.0000	0.0	0.00%	1979.9	4.66%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	0.0	0.00%	2673.6	6.29%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	277.0	0.65%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-0.000e+00	1.0000	0.0	0.00%	11.8	0.03%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-0.000e+00	1.0000	0.0	0.00%	1724.7	4.06%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-0.000e+00	1.0000	0.0	0.00%	1041.6	2.45%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	0.000e+00	1.0000	0.0	0.00%	1370.8	3.22%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	640.2	1.51%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	179.2	0.42%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	0.000e+00	1.0000	0.0	0.00%	2072.1	4.87%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	562.7	1.32%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	581.6	1.37%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	0.000e+00	1.0000	0.0	0.00%	550.7	1.30%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	144.9	0.34%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	820.9	1.93%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	0.000e+00	1.0000	0.0	0.00%	1586.5	3.73%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	910.1	2.14%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	910.1	2.14%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	0.000e+00	1.0000	0.0	0.00%	2380.9	5.60%