Information for 4-CCGT (Motif 14)

A G T C A G T C A C T G A C G T
Reverse Opposite:
C G T A A G T C A C T G A C T G
p-value:1e0
log p-value:-4.327e-01
Information Content per bp:1.530
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif82.61%
Number of Background Sequences with motif35463.9
Percentage of Background Sequences with motif83.41%
Average Position of motif in Targets587.0 +/- 271.8bp
Average Position of motif in Background574.9 +/- 324.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)3.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OVOL2/MA1545.1/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CCGT------
GTACCGTTATGTG
 A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C G A T G C T A T A G C A T G C A C T G A G C T A C G T T C G A A G C T C A T G G A C T A T C G

PB0045.1_Myb_1/Jaspar

Match Rank:2
Score:0.76
Offset:-7
Orientation:forward strand
Alignment:-------CCGT------
ATGGAAACCGTTATTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G A T C A T G C A T G G T C A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C A T G C A T G A C T C G A T

PB0046.1_Mybl1_1/Jaspar

Match Rank:3
Score:0.76
Offset:-7
Orientation:forward strand
Alignment:-------CCGT------
TTGAAAACCGTTAATTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C G A T C A T G C G T A G C T A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C T A G C A T G A C T C G A T

OVOL1/MA1544.1/Jaspar

Match Rank:4
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CCGT------
AAAACCGTTATTTG
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G T A G C T A A G T C A G T C C A T G A C G T A C G T G T C A A G C T A G C T G A C T A T C G

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CCGT---
BRRCVGTTDN
 A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCGT--
GGCVGTTR
 A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T
C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A

HOXA9/MA0594.2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCGT-----
GTCGTAAACG
 A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCGT-----
NHGTCGTGAYDN
 A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCGT---
TGGCAGTTGG
 A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A C G T
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCGT--
GGACGTGC
 A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C