Information for 4-TAGGTCAAST (Motif 4)

A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
Reverse Opposite:
C G T A A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T G T C A
p-value:1e-6
log p-value:-1.566e+01
Information Content per bp:1.911
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif8.51%
Number of Background Sequences with motif38.2
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets654.2 +/- 314.0bp
Average Position of motif in Background483.4 +/- 287.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:TAGGTCAAST
-AGGTCA---
 A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.78
Offset:-6
Orientation:forward strand
Alignment:------TAGGTCAAST
TATAAGTAGGTCAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCAAST
ATCAAGGTCA---
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TAGGTCAAST
TRAGGTCA---
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCAAST
AAYTAGGTCA---
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCAAST
AAYTAGGTCA---
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:7
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TAGGTCAAST
GAGGTCAT--
 A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T A C G T A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:8
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-TAGGTCAAST
CGAGGTCAC--
 A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:9
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TAGGTCAAST
AATTAGGTCAC--
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C A C G T A C G T

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TAGGTCAAST
CAAAGKTCAA--
 A C G T A C G T A C G T C G T A A C T G A C T G A C G T A G T C C G T A G T C A A T G C A C G T
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A A C G T A C G T