Information for 2-TTAG (Motif 12)

A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A
p-value:1e0
log p-value:-8.109e-01
Information Content per bp:1.530
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif91.49%
Number of Background Sequences with motif37015.8
Percentage of Background Sequences with motif89.52%
Average Position of motif in Targets489.9 +/- 265.5bp
Average Position of motif in Background483.9 +/- 293.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)3.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TTAG
BCMATTAG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

HOXB3/MA0903.1/Jaspar

Match Rank:2
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----TTAG-
ACTAATTAGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----TTAG
GCAATTAG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

HOXD3/MA0912.2/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TTAG
GTAATTAG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G
T A C G A G C T G T C A C G T A A C G T A C G T C T G A T C A G

Isl1/MA1608.1/Jaspar

Match Rank:5
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----TTAG--
ATCCATTAGCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T
C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

BSX/MA0876.1/Jaspar

Match Rank:6
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----TTAG
CCAATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

GSX2/MA0893.2/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----TTAG
GTAATTAG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G
T A C G G A C T T G C A C T G A A G C T A C G T C T G A C T A G

PDX1/MA0132.2/Jaspar

Match Rank:8
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----TTAG
GTAATTAG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G
T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----TTAG
ACCGATTAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

EVX2/MA0888.1/Jaspar

Match Rank:10
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----TTAG-
GGTAATTAGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C