Information for 10-ACCTAGGTAG (Motif 10)

C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G
Reverse Opposite:
T A G C G A C T C T G A A T G C T G A C A C G T C G T A A C T G A C T G A G C T
p-value:1e-3
log p-value:-8.349e+00
Information Content per bp:1.737
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.26%
Number of Background Sequences with motif18.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets418.7 +/- 167.1bp
Average Position of motif in Background667.3 +/- 186.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACCTAGGTAG-
TTGACCTANTTATN
 A C G T A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ACCTAGGTAG
TGACCTARTT--
 A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ACCTAGGTAG
TGACCTARTT--
 A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

RORC/MA1151.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ACCTAGGTAG
TGACCTANTTAN
 A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G
G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ACCTAGGTAG
BTGACCTAVTTW-
 A C G T A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T A C G T

TBXT/MA0009.2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ACCTAGGTAG--
TCACACCTAGGTGTGA
 A C G T A C G T A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G A C G T A C G T
G A C T T G A C C T G A A G T C T C G A G A T C T G A C G A C T C G T A A C T G C T A G A G C T C T A G G A C T A C T G C T G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------ACCTAGGTAG
NNHYTGACCTAGWTT-
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACCTAGGTAG
TGACCTTGAT--
 A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T

RORB/MA1150.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ACCTAGGTAG
NTGACCTAATT--
 A C G T A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACCTAGGTAG----
GAAAACTAGTTAACATC
 A C G T A C G T A C G T C T G A G T A C A G T C C G A T G T C A A C T G A T C G A G C T C T G A A T C G A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C