Information for 1-ATGGCAAAAC (Motif 1)

G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C
Reverse Opposite:
C T A G A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T C A A C G T
p-value:1e-8
log p-value:-1.880e+01
Information Content per bp:1.862
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif19.15%
Number of Background Sequences with motif514.0
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets582.0 +/- 317.0bp
Average Position of motif in Background463.1 +/- 314.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0145.1_Mafb_2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGGCAAAAC---
CAATTGCAAAAATAT
 A C G T A C G T G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

NFAT5/MA0606.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAAAAC
NATGGAAAAN-
 A C G T G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATGGCAAAAC------
AACACCAAAACAAAGGA
 A C G T G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCAAAAC
AATGGAAAAT-
 A C G T G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T

CEBPA/MA0102.4/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATGGCAAAAC--
TTATTGCACAATAT
 A C G T A C G T G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C A C G T A C G T
C G A T C A G T T C G A G C A T C A G T C A T G G A T C C T G A G A T C G T C A C G T A A G C T G C T A G C A T

PB0123.1_Foxl1_2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGGCAAAAC------
ATATCAAAACAAAACA
 G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ATGGCAAAAC-------
---GCAAAACATTACTA
 G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

CEBPD/MA0836.2/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATGGCAAAAC--
TATTGCACAATAT
 A C G T G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C A C G T A C G T
C A G T T C G A G A C T C A G T C A T G G A T C C T G A G A T C G T C A C T G A A G C T G C T A G C A T

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATGGCAAAAC
-TGGAAAA--
 G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C
A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T

RFX1/MA0509.2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCAAAAC
TNCCATAGCAACNN
 A C G T A C G T A C G T A C G T G T C A C A G T C T A G C T A G A G T C C G T A C G T A C G T A C G T A G A T C
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G