Information for 6-CAGCAGCAGC (Motif 6)

A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C
Reverse Opposite:
A C T G A T G C A G C T A C T G A G T C G A C T A C T G T A G C A G C T A C T G
p-value:1e-4
log p-value:-9.698e+00
Information Content per bp:1.829
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif22.92%
Number of Background Sequences with motif2553.0
Percentage of Background Sequences with motif5.65%
Average Position of motif in Targets599.6 +/- 235.1bp
Average Position of motif in Background570.1 +/- 321.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAGCAGCAGC-
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C G T A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGCAGC-----
CTCAGCAGCTGCTACTG
 A C G T A C G T A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGCAGC-
NNAGCAGCTGCT
 A C G T A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CAGCAGCAGC-
-AGCAGCTGCT
 A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C A C G T
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAGCAGCAGC-
SSRGCAGCTGCH
 A C G T A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C A C G T
T A C G T A C G C T A G T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CAGCAGCAGC
CAGCAGCTGN
 A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

MYOG/MA0500.2/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CAGCAGCAGC--
NNGCAGCTGCNN
 A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C A C G T A C G T
T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CAGCAGCAGC-
-CGCAGCTGCG
 A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C A C G T
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAGCAGCAGC
-ANCAGCTG-
 A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C
A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAGCAGCAGC--
-CACAGCAGGGG
 A G T C T C G A A T C G A G T C C T G A A C T G A G T C C T G A A T C G A G T C A C G T A C G T
A C G T T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G