Information for 4-ACTTAGCCAT (Motif 4)

C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T
Reverse Opposite:
C G T A A C G T A T C G A C T G A G T C A C G T C G T A C G T A C T A G A C G T
p-value:1e-7
log p-value:-1.732e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif26.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets494.2 +/- 452.1bp
Average Position of motif in Background475.3 +/- 323.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0004.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------ACTTAGCCAT
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------ACTTAGCCAT
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ACTTAGCCAT-
AGCGCTAATTAGCGATT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ACTTAGCCAT
GCACTTAA----
 A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACTTAGCCAT
ACCACTTAA----
 A C G T A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T

PH0032.1_Evx2/Jaspar

Match Rank:6
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------ACTTAGCCAT-
ANCGCTAATTAGCGGTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

PH0098.1_Lhx8/Jaspar

Match Rank:7
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------ACTTAGCCAT-
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACTTAGCCAT---
NNAATTAGTCACGGT
 A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACTTAGCCAT
BCMATTAG----
 A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T

MAFK/MA0496.3/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----ACTTAGCCAT
TGCTGACTCAGCAAT
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A C G T C G T A A C T G A G T C A T G C C G T A A C G T
G C A T T A C G T G A C G C A T A C T G T G C A A T G C G C A T G T A C C G T A A C T G T A G C G T C A G C T A G C A T