Information for 6-CAAATGTATA (Motif 6)

A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
Reverse Opposite:
A G C T C G T A A C G T G T C A A G T C C G T A A C G T A C G T A C G T A C T G
p-value:1e-6
log p-value:-1.394e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif13.04%
Number of Background Sequences with motif305.3
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets273.5 +/- 92.3bp
Average Position of motif in Background495.0 +/- 328.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB/MA0100.3/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAAATGTATA
ACCAACTGTC--
 A C G T A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
G T C A A G T C A G T C C T G A G C T A A G T C A C G T T C A G G A C T G T A C A C G T A C G T

Bhlha15/MA0607.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAAATGTATA
CCATATGT---
 A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T A C G T A C G T A C G T

TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAAATGTATA
DMCAGATGKS--
 A C G T A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
C G T A T G A C A G T C C G T A A C T G G T C A A C G T A C T G A C G T A T G C A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAAATGTATA
ACCATATGTT--
 A C G T A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T

MSGN1/MA1524.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAAATGTATA
CGCCATATGTCC-
 A C G T A C G T A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
A T G C T C A G A T G C A T G C C T G A G C A T C G T A A G C T A T C G A C G T A G T C T A G C A C G T

MXI1/MA1108.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAAATGTATA
GACACATGGC--
 A C G T A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
C T A G T C G A G A T C C T G A A G T C C T G A A G C T C T A G A C T G A T G C A C G T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAAATGTATA--
AAAAAATCGATAAT
 A C G T A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

TWIST1/MA1123.2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CAAATGTATA
ATTCCAGATGTTT-
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
C G T A C G A T C G A T T G A C G T A C C G T A A C T G T G C A G A C T A C T G A C G T A G C T G C A T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAAATGTATA---
---ATGMATATDC
 A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Isl1/MA1608.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAAATGTATA
NNCTAATGGNN-
 A C G T A C G T A G T C C G T A C G T A G T C A A C G T A C T G A C G T C G T A A C G T C T G A
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T